1MN9	Transferase	date	Sep 05, 2002
title	Ndp Kinase Mutant (H122g) Complex With Rtp
authors	S.Gallois-Montbrun, Y.Chen, H.Dutartre, S.Morera, C.Guerreiro, L. B.Schneider, J.Janin, B.Canard, M.Veron, D.Deville-Bonne
compound		source
Molecule: Ndp Kinase Chain: A, B, C Synonym: Nucleoside Diphosphate Kinase, Cytosolic Ec: 2.7.4.6 Engineered: Yes Mutation: Yes		Organism_scientific: Dictyostelium Discoideum Organism_taxid: 44689 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 31 2 1	R_factor 0.207 R_Free 0.249
crystal cell	length a length b length c angle alpha angle beta angle gamma 71.731 71.731 153.818 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.90 Å
ligand	MG, RTP	enzyme	Transferase E.C.2.7.4.6 BRENDA
related structures	by homologous chain: 1NSK
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	Structural analysis of the activation of ribavirin analogs by NDP kinase: comparison with other ribavirin targets., Gallois-Montbrun S, Chen Y, Dutartre H, Sophys M, Morera S, Guerreiro C, Schneider B, Mulard L, Janin J, Veron M, Deville-Bonne D, Canard B, Mol Pharmacol 2003 Mar;63(3):538-46. PMID:12606760

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk] Biological Unit Coordinates (1mn9.pdb1.gz) 140 Kb LPC: Ligand-Protein Contacts for 1MN9 CSU: Contacts of Structural Units for 1MN9 Likely Quarternary Molecular Structure file(s) for 1MN9 Structure Factors (88 Kb) Retrieve 1MN9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1MN9 from S2C, [Save to disk] Re-refined 1mn9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1MN9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1MN9

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1MN9, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1mn9a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1mn9b_, region B [Jmol] [rasmolscript] [script source]     - Domain d1mn9c_, region C [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1mn9] [1mn9_C] [1mn9_A] [1mn9_B] SWISS-PROT database: [P22887] Domain organization of [NDKC_DICDI] by SWISSPFAM Domain found in 1MN9: [NDK ] by SMART

Other resources with information on 1MN9

Community annotation for 1MN9 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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