1MOE Immune System date Sep 09, 2002
title The Three-Dimensional Structure Of An Engineered Scfv T84.66 Diabody In Vl To Vh Linkage.
authors J.A.Carmichael, B.E.Power, T.P.J.Garrett, P.J.Yazaki, J.E.Shivel A.A.Raubischek, A.M.Wu, P.J.Hudson
compound source
Molecule: Anti-Cea Mab T84.66
Chain: A, B
Fragment: Residues 1-240
Synonym: T84.66 Anti-Cea Scfv Dimer
Engineered: Yes
Other_details: Immunoglobulin Variable Domains Linked Vl To (Gggsgggg)
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Mus Musculus
Expression_system_common: House Mouse
Expression_system_taxid: 10090
Expression_system_cell: Myeloma Nso Cells
Expression_system_vector_type: Plasmid
Expression_system_vector: Shuttle
Expression_system_plasmid: Pee12
Expression_system_gene: T84.66
symmetry Space Group: P 41 21 2
R_factor 0.213 R_Free 0.300
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.314 64.314 247.930 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand SO4 enzyme
related structures by homologous chain: 1AXS
Primary referenceThe crystal structure of an anti-CEA scFv diabody assembled from T84.66 scFvs in V(L)-to-V(H) orientation: implications for diabody flexibility., Carmichael JA, Power BE, Garrett TP, Yazaki PJ, Shively JE, Raubischek AA, Wu AM, Hudson PJ, J Mol Biol 2003 Feb 14;326(2):341-51. PMID:12559905
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (1moe.pdb1.gz) 77 Kb
  • Biological Unit Coordinates (1moe.pdb2.gz) 151 Kb
  • LPC: Ligand-Protein Contacts for 1MOE
  • CSU: Contacts of Structural Units for 1MOE
  • Likely Quarternary Molecular Structure file(s) for 1MOE
  • Structure Factors (182 Kb)
  • Retrieve 1MOE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MOE from S2C, [Save to disk]
  • Re-refined 1moe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1MOE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MOE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1MOE, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1moea1, region A:1-119 [Jmol] [rasmolscript] [script source]
        - Domain d1moea2, region A:120-240 [Jmol] [rasmolscript] [script source]
        - Domain d1moeb1, region B:1-119 [Jmol] [rasmolscript] [script source]
        - Domain d1moeb2, region B:120-240 [Jmol] [rasmolscript] [script source]
  • Fold representative 1moe from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1moe_B] [1moe] [1moe_A]
  • SWISS-PROT database: [Q5R3X1]
  • Domain organization of [Q5R3X1_MOUSE] by SWISSPFAM
  • Domain found in 1MOE: [IGv ] by SMART
  • Other resources with information on 1MOE
  • Community annotation for 1MOE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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