1MOT Membrane Protein date Sep 09, 2002
title Nmr Structure Of Extended Second Transmembrane Domain Of Glycine Receptor Alpha1 Subunit In Sds Micelles
authors V.E.Yushmanov, P.K.Mandal, Z.Liu, P.Tang, Y.Xu
compound source
Molecule: Glycine Receptor Alpha-1 Chain
Chain: A
Fragment: Extented Second Transmembrane Domain
Synonym: Glycine Receptor Alpha1 Subunit, Glycine Receptor 48kda Subunit, Strychnine Binding Subunit;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Glra1
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-3x
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNMR structure and backbone dynamics of the extended second transmembrane domain of the human neuronal glycine receptor alpha1 subunit., Yushmanov VE, Mandal PK, Liu Z, Tang P, Xu Y, Biochemistry 2003 Apr 8;42(13):3989-95. PMID:12667090
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (155 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1MOT
  • Original NMR restraints for 1MOT from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1MOT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MOT from S2C, [Save to disk]
  • View 1MOT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MOT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1MOT, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mota_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1mot from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mot] [1mot_A]
  • SWISS-PROT database: [P23415]
  • Belongs to the neurotransmitter receptor, cys loop, ligand-gated ion channel (lic) family according to TCDB.
  • Domain organization of [GLRA1_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 1MOT with the sequences similar proteins can be viewed for 1MOT's classification [GLRA1_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [GLRA1_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1MOT
  • Community annotation for 1MOT at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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