1MOW Hydrolase Dna date Sep 10, 2002
title E-Drei
authors B.S.Chevalier, T.Kortemme, M.S.Chadsey, D.Baker, R.J.Monnat Jr., B.L.Stoddard
compound source
Molecule: 5'-D(Cpcpapapapcptpgptpcptpcpapapg Cpgpgpcpg)-3';
Chain: B, E, H, K
Engineered: Yes
Other_details: Dna Target Site (Top Strand)
 Synthetic: Yes

Molecule: 5'-D(Cpgpcpcpgpgpapapcptptpgpapgpa Tptptpgpg)-3';
Chain: C, F, I, L
Engineered: Yes
Other_details: Dna Target Site (Bottom Strand)
Synthetic: Yes

Molecule: Chimera Of Homing Endonuclease I-Dmoi And Dna End I-Crei;
Chain: A, D, G, J
Ec: 3.1.-.-
Engineered: Yes
Other_details: The Chimera Contains Large Domain Of I-Dmoi
One Subunit Of I-Crei: E-Drei Protein
Organism_scientific: Desulfurococcus Mobilis, Chlamydomonas Reinhardtii;
Organism_common: ,
Organism_taxid: 2274, 3055
Strain: ,
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21[De3]
Expression_system_vector_type: T7
Expression_system_plasmid: Pdre16
symmetry Space Group: P 31
R_factor 0.231 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
131.760 131.760 120.910 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
ligand GOL, MG, SO4 enzyme Hydrolase E.C.3.1 BRENDA
note 1MOW is a representative structure
related structures by homologous chain: 1B24, 1U0C
Gene
Ontology
ChainFunctionProcessComponent
A, J, D, G
  • nuclease activity
  • endonuclease activity


    • Primary referenceDesign, activity, and structure of a highly specific artificial endonuclease., Chevalier BS, Kortemme T, Chadsey MS, Baker D, Monnat RJ, Stoddard BL, Mol Cell 2002 Oct;10(4):895-905. PMID:12419232
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (222 Kb) [Save to disk]
  • Biological Unit Coordinates (1mow.pdb1.gz) 68 Kb
  • Biological Unit Coordinates (1mow.pdb2.gz) 68 Kb
  • Biological Unit Coordinates (1mow.pdb3.gz) 44 Kb
  • Biological Unit Coordinates (1mow.pdb4.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 1MOW
  • CSU: Contacts of Structural Units for 1MOW
  • Likely Quarternary Molecular Structure file(s) for 1MOW
  • Structure Factors (1055 Kb)
  • Retrieve 1MOW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MOW from S2C, [Save to disk]
  • Re-refined 1mow structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1MOW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1MOW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1MOW, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mowa1, region A:100-252 [Jmol] [rasmolscript] [script source]
        - Domain d1mowa2, region A:5-99 [Jmol] [rasmolscript] [script source]
        - Domain d1mowd2, region D:505-599 [Jmol] [rasmolscript] [script source]
        - Domain d1mowd1, region D:600-752 [Jmol] [rasmolscript] [script source]
        - Domain d1mowg2, region G:1007-1098 [Jmol] [rasmolscript] [script source]
        - Domain d1mowg1, region G:1100-1250 [Jmol] [rasmolscript] [script source]
        - Domain d1mowj2, region J:1506-1599 [Jmol] [rasmolscript] [script source]
        - Domain d1mowj1, region J:1600-1752 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mow_L] [1mow_B] [1mow_G] [1mow_C] [1mow_H] [1mow_A] [1mow_J] [1mow_E] [1mow_K] [1mow_F] [1mow] [1mow_D] [1mow_I]
  • SWISS-PROT database: [P05725]
  • Domain organization of [DNE1_CHLRE] by SWISSPFAM
    • Other resources with information on 1MOW
  • Community annotation for 1MOW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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