1MPG 3-METHYLADENINE DNA GLYCOSYLASE II FROM ESCHERICHIA COLI date
authors Labahn, J., Schaerer, O.D., Long, A., Ezaz-Nikpay, K., Verdine, G.L., Ellenberger, T.E.
compound source
symmetry
R_factor
R_Free 0.2470000
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand GOL enzyme
related structures by homologous chain: 1PVS
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis for the excision repair of alkylation-damaged DNA., Labahn J, Scharer OD, Long A, Ezaz-Nikpay K, Verdine GL, Ellenberger TE, Cell 1996 Jul 26;86(2):321-9. PMID:8706136
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (1mpg.pdb1.gz) 48 Kb
  • Biological Unit Coordinates (1mpg.pdb2.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 1MPG
  • CSU: Contacts of Structural Units for 1MPG
  • Likely Quarternary Molecular Structure file(s) for 1MPG
  • Retrieve 1MPG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MPG from S2C, [Save to disk]
    • View 1MPG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1MPG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1MPG, from MSDmotif at EBI
  • Genome occurence of 1MPG's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mpga2, region A:1-99 [Jmol] [rasmolscript] [script source]
        - Domain d1mpga1, region A:100-282 [Jmol] [rasmolscript] [script source]
        - Domain d1mpgb2, region B:1-99 [Jmol] [rasmolscript] [script source]
        - Domain d1mpgb1, region B:100-282 [Jmol] [rasmolscript] [script source]
  • Fold representative 1mpg from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mpg_A] [1mpg] [1mpg_B]
  • SWISS-PROT database: [P04395]
  • Domain organization of [3MG2_ECOLI] by SWISSPFAM
  • Domains found in 1MPG: [AlkA_N] [ENDO3c ] by SMART
    • Other resources with information on 1MPG
  • Community annotation for 1MPG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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