1MPV Protein Binding date Sep 12, 2002
title Structure Of Bhpbr3, The Baff-Binding Loop Of Br3 Embedded In A Beta-Hairpin Peptide
authors N.Kayagaki, M.Yan, D.Seshasayee, H.Wang, W.Lee, D.M.French, I.S.Grewal, A.G.Cochran, N.C.Gordon, J.Yin, M.A.Starovasnik, V.M.Dixit
compound source
Molecule: Blys Receptor 3
Chain: A
Fragment: Br3 Loop (Residues 26-31)
Synonym: Tumor Necrosis Factor Receptor Superfamily Member 13c, B Cell-Activating Factor Receptor, Baff Receptor, Baff-R, Blys Receptor 3;
Engineered: Yes
Other_details: The Receptor Loop Is Embedded Within A Beta- Hairpin (Bhp) Scaffold
Synthetic: Yes
Other_details: The Peptide Was Synthesized Chemically With Acetylated N-Terminus And Amidated C-Terminus
methodSolution NMR
ligand ACE, NH2 enzyme
Primary referenceBAFF/BLyS receptor 3 binds the B cell survival factor BAFF ligand through a discrete surface loop and promotes processing of NF-kappaB2., Kayagaki N, Yan M, Seshasayee D, Wang H, Lee W, French DM, Grewal IS, Cochran AG, Gordon NC, Yin J, Starovasnik MA, Dixit VM, Immunity 2002 Oct;17(4):515-24. PMID:12387744
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 1MPV
  • CSU: Contacts of Structural Units for 1MPV
  • Retrieve 1MPV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MPV from S2C, [Save to disk]
  • View 1MPV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MPV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1MPV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mpva_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1mpv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mpv] [1mpv_A]
  • SWISS-PROT database: [Q96RJ3]
  • Domain organization of [TR13C_HUMAN] by SWISSPFAM
  • Other resources with information on 1MPV
  • Community annotation for 1MPV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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