1MU7	Hydrolase	date	Sep 23, 2002
title	Crystal Structure Of A Human Tyrosyl-Dna Phosphodiesterase ( Tungstate Complex
authors	D.R.Davies, H.Interthal, J.J.Champoux, W.G.J.Hol
compound		source
Molecule: Tyrosyl-Dna Phosphodiesterase Chain: A, B Fragment: Residues 149-608 Synonym: Tdp1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
symmetry	Space Group: P 21 21 21	R_factor 0.201 R_Free 0.218
crystal cell	length a length b length c angle alpha angle beta angle gamma 50.058 105.276 194.683 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	GOL, WO4	enzyme
related structures	by homologous chain: 1MU9, 1RGT
Gene Ontology	Chain Function Process Component A, B
Primary reference	Insights into substrate binding and catalytic mechanism of human tyrosyl-DNA phosphodiesterase (Tdp1) from vanadate and tungstate-inhibited structures., Davies DR, Interthal H, Champoux JJ, Hol WG, J Mol Biol 2002 Dec 13;324(5):917-32. PMID:12470949

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (147 Kb) [Save to disk] Biological Unit Coordinates (1mu7.pdb1.gz) 71 Kb Biological Unit Coordinates (1mu7.pdb2.gz) 74 Kb LPC: Ligand-Protein Contacts for 1MU7 CSU: Contacts of Structural Units for 1MU7 Likely Quarternary Molecular Structure file(s) for 1MU7 Structure Factors (539 Kb) Retrieve 1MU7 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1MU7 from S2C, [Save to disk] Re-refined 1mu7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1MU7 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1MU7

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1MU7, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1mu7a1, region A:162-350 [Jmol] [rasmolscript] [script source]     - Domain d1mu7a2, region A:351-608 [Jmol] [rasmolscript] [script source]     - Domain d1mu7b1, region B:158-350 [Jmol] [rasmolscript] [script source]     - Domain d1mu7b2, region B:351-608 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1mu7_B] [1mu7] [1mu7_A] SWISS-PROT database: [Q9NUW8] Domain organization of [TYDP1_HUMAN] by SWISSPFAM

Other resources with information on 1MU7

Community annotation for 1MU7 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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Images from IMB Jena Image Library of Biological Macromolecules.

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