1MUI Hydrolase date Sep 23, 2002
title Crystal Structure Of Hiv-1 Protease Complexed With Lopinavir
authors V.Stoll, W.Qin, K.D.Stewart, C.Jakob, C.Park, K.Walter, R.L.Simmer R.Helfrich, D.Bussiere, J.Kao, D.Kempf, H.L.Sham, D.W.Norbeck
compound source
Molecule: Protease
Chain: B, A
Fragment: Residues 57-155
Ec: 3.4.23.16
Engineered: Yes
Mutation: Yes
Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11b
symmetry Space Group: P 61
R_factor 0.261 R_Free 0.329
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.264 63.264 83.621 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
ligand AB1 enzyme Hydrolase E.C.3.4.23.16 BRENDA
related structures by homologous chain: 1BDL, 1KJ4
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceX-ray crystallographic structure of ABT-378 (lopinavir) bound to HIV-1 protease., Stoll V, Qin W, Stewart KD, Jakob C, Park C, Walter K, Simmer RL, Helfrich R, Bussiere D, Kao J, Kempf D, Sham HL, Norbeck DW, Bioorg Med Chem 2002 Aug;10(8):2803-6. PMID:12057670
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (1mui.pdb1.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 1MUI
  • CSU: Contacts of Structural Units for 1MUI
  • Likely Quarternary Molecular Structure file(s) for 1MUI
  • Structure Factors (68 Kb)
  • Retrieve 1MUI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MUI from S2C, [Save to disk]
  • Re-refined 1mui structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1MUI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MUI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1MUI, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1muia_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1muib_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mui_B] [1mui_A] [1mui]
  • SWISS-PROT database: [Q903J0]
  • Domain organization of [Q903J0_9HIV1] by SWISSPFAM
  • Other resources with information on 1MUI
  • Community annotation for 1MUI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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