4DM0 TN5 transposase: 20MER OUTSIDE END 2 MN complex date
authors Klenchin, V.A., Lovell, S., Goryshin, I.Y., Reznikoff, W.R., Rayment, I.
compound source
symmetry
R_factor
R_Free 0.2028
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand EDO, MN enzyme
note 4DM0 supersedes 1MUR, 1L1A
Gene
Ontology
ChainFunctionProcessComponent
A
  • nuclease activity
  • endonuclease activity


    • Primary referenceTwo-metal active site binding of a Tn5 transposase synaptic complex., Lovell S, Goryshin IY, Reznikoff WR, Rayment I, Nat Struct Biol. 2002 Apr;9(4):278-81. PMID:11896402
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (193 Kb) [Save to disk]
  • Biological Unit Coordinates (4dm0.pdb1.gz) 371 Kb
  • LPC: Ligand-Protein Contacts for 4DM0
  • CSU: Contacts of Structural Units for 4DM0
  • Structure Factors (399 Kb)
  • Retrieve 4DM0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DM0 from S2C, [Save to disk]
  • Re-refined 4dm0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4DM0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4DM0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DM0, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dm0_C] [4dm0_B] [4dm0_A] [4dm0]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4DM0
  • Community annotation for 4DM0 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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