OCA Atlas for 1MV0

1MV0

Endocytosis Exocytosis, Transcription

date

Sep 24, 2002

title

Nmr Structure Of The Tumor Suppressor Bin1: Alternative Spli Melanoma And Interaction With C-Myc

authors

A.Pineda-Lucena, C.H.Arrowsmith

compound

source

Molecule: Myc Proto-Oncogene Protein
Chain: A
Fragment: Residues 55-68
Synonym: C-Myc, Transcription Factor P64
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b

Molecule: Myc Box-Dependent-Interacting Protein 1
Chain: B
Fragment: Residues 513-593
Synonym: Bridging Integrator 1, Amphiphysin-Like Protein, A II, Box-Dependent;
Engineered: Yes

method

Solution NMR

Gene
Ontology

Chain	Function	Process	Component
B

Primary reference

A structure-based model of the c-Myc/Bin1 protein interaction shows alternative splicing of Bin1 and c-Myc phosphorylation are key binding determinants., Pineda-Lucena A, Ho CS, Mao DY, Sheng Y, Laister RC, Muhandiram R, Lu Y, Seet BT, Katz S, Szyperski T, Penn LZ, Arrowsmith CH, J Mol Biol. 2005 Aug 5;351(1):182-94. PMID:15992821

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (504 Kb) [Save to disk]

Biological Unit Coordinates (1mv0.pdb1.gz) 25 Kb

CSU: Contacts of Structural Units for 1MV0

Retrieve 1MV0 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1MV0 from S2C, [Save to disk]

View 1MV0 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1MV0

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 1MV0, from MSDmotif at EBI

Classification of representative domains in scop (Structural Classification of Proteins)
- Domain d1mv0b_, region B [Jmol] [rasmolscript] [script source]

Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH

Summaries and structural analyses of PDB data files from PDBSum

Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1mv0] [1mv0_A] [1mv0_B]

SWISS-PROT database: [O00499] [P01106]

Domain organization of [BIN1_HUMAN] [MYC_HUMAN] by SWISSPFAM

Domain found in 1MV0: [SH3 ] by SMART

Other resources with information on 1MV0

Community annotation for 1MV0 at PDBWiki (http://pdbwiki.org)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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