1MV3 Endocytosis Exocytosis date Sep 24, 2002
title Nmr Structure Of The Tumor Suppressor Bin1: Alternative Spli Melanoma And Interaction With C-Myc
authors A.Pineda-Lucena, C.H.Arrowsmith
compound source
Molecule: Myc Box Dependent Interacting Protein 1
Chain: A
Fragment: Isoform Bin1+12a (Residues 301-377, 458-594)
Synonym: Bin1, Bridging Integrator 1, Amphiphysin-Like Prot Amphiphysin II, Box-Dependent Myc-Interacting Protein-1;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
methodSolution NMR
related structures by homologous chain: 1BB9, 1MUZ
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA structure-based model of the c-Myc/Bin1 protein interaction shows alternative splicing of Bin1 and c-Myc phosphorylation are key binding determinants., Pineda-Lucena A, Ho CS, Mao DY, Sheng Y, Laister RC, Muhandiram R, Lu Y, Seet BT, Katz S, Szyperski T, Penn LZ, Arrowsmith CH, J Mol Biol. 2005 Aug 5;351(1):182-94. PMID:15992821
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1060 Kb) [Save to disk]
  • Biological Unit Coordinates (1mv3.pdb1.gz) 52 Kb
  • CSU: Contacts of Structural Units for 1MV3
  • Retrieve 1MV3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MV3 from S2C, [Save to disk]
    • View 1MV3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1MV3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1MV3, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mv3a1, region A:402-482 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mv3_A] [1mv3]
  • SWISS-PROT database: [O00499]
  • Domain organization of [BIN1_HUMAN] by SWISSPFAM
  • Domain found in 1MV3: [SH3 ] by SMART
    • Other resources with information on 1MV3
  • Community annotation for 1MV3 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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