1MVR Ribosome date Sep 26, 2002
title Decoding Center & Peptidyl Transferase Center From The X-Ray Of The Thermus Thermophilus 70s Ribosome, Aligned To The Lo Resolution Cryo-Em Map Of E.Coli 70s Ribosome
authors U.B.Rawat, A.V.Zavialov, J.Sengupta, M.Valle, R.A.Grassucci, J.Li B.Vestergaard, M.Ehrenberg, J.Frank
compound source
Molecule: Mrna, Triplet Codon (A-Site)
Chain: 1
Other_details: Based On Coordinates From 1gix, 30s Subunit
Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K12

Molecule: Helix 34 Of 16s Rrna
Chain: A
Other_details: Based On Coordinates From 1gix, 30s Subunit

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K12

Molecule: Helix 44 Of 16s Rrna
Chain: B
Other_details: Based On Coordinates From 1gix, 30s Subunit

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K12

Molecule: Helix 69 Of 23s Rrna
Chain: C
Other_details: Based On Coordinates From 1giy, 50s Subunit

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K12

Molecule: Helix 89 Of 23s Rrna
Chain: D
Other_details: Based On Coordinates From 1giy, 50s Subunit

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K12

Molecule: Helix 93 Of 23s Rrna
Chain: E
Other_details: Based On Coordinates From 1giy, 50s Subunit

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K12

Molecule: 30s Ribosomal Protein S12
Chain: O
Other_details: Based On Coordinates From 1gix, 30s Subunit

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K12

Molecule: 50s Ribosomal Protein L11
Chain: L
Other_details: Based On Coordinates From 1giy, 50s Subunit

Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K12
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method Electron Microscopyresolution 12.80 Å
Gene
Ontology
ChainFunctionProcessComponent
L


O


Primary referenceA cryo-electron microscopic study of ribosome-bound termination factor RF2., Rawat UB, Zavialov AV, Sengupta J, Valle M, Grassucci RA, Linde J, Vestergaard B, Ehrenberg M, Frank J, Nature 2003 Jan 2;421(6918):87-90. PMID:12511960
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (13 Kb) [Save to disk]
  • Biological Unit Coordinates (1mvr.pdb1.gz) 10 Kb
  • CSU: Contacts of Structural Units for 1MVR
  • Likely Quarternary Molecular Structure file(s) for 1MVR
  • Retrieve 1MVR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MVR from S2C, [Save to disk]
  • View 1MVR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MVR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1MVR, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mvr1_, region 1 [Jmol] [rasmolscript] [script source]
        - Domain d1mvra_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1mvrb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1mvrc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1mvrd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1mvre_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1mvrl_, region L [Jmol] [rasmolscript] [script source]
        - Domain d1mvro_, region O [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mvr_A] [1mvr_L] [1mvr] [1mvr_O] [1mvr_C] [1mvr_B] [1mvr_1] [1mvr_D] [1mvr_E]
  • SWISS-PROT database: [P29395] [Q5SHN3]
  • Domain organization of [RL11_THEMA] [RS12_THET8] by SWISSPFAM
  • Domain found in 1MVR: [RL11 ] by SMART
  • Other resources with information on 1MVR
  • Community annotation for 1MVR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science