1MWP Sugar Binding Protein date Mar 09, 1999
title N-Terminal Domain Of The Amyloid Precursor Protein
authors J.Rossjohn, R.Cappai, S.C.Feil, A.Henry, W.J.Mckinstry, D.Galatis, L.Hesse, G.Multhaup, K.Beyreuther, C.L.Masters, M.W.Parker
compound source
Molecule: Amyloid A4 Protein
Chain: A
Fragment: Heparin Binding Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cellular_location: Cell Surface
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
symmetry Space Group: P 21 21 21
R_factor 0.203 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
31.200 48.600 67.400 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
note 1MWP (Molecule of the Month:pdb79)is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the N-terminal, growth factor-like domain of Alzheimer amyloid precursor protein., Rossjohn J, Cappai R, Feil SC, Henry A, McKinstry WJ, Galatis D, Hesse L, Multhaup G, Beyreuther K, Masters CL, Parker MW, Nat Struct Biol 1999 Apr;6(4):327-31. PMID:10201399
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (22 Kb) [Save to disk]
  • Biological Unit Coordinates (1mwp.pdb1.gz) 18 Kb
  • CSU: Contacts of Structural Units for 1MWP
  • Likely Quarternary Molecular Structure file(s) for 1MWP
  • Structure Factors (66 Kb)
  • Retrieve 1MWP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MWP from S2C, [Save to disk]
  • Re-refined 1mwp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1MWP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MWP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1MWP, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mwpa_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1mwp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mwp] [1mwp_A]
  • SWISS-PROT database: [P05067]
  • Belongs to the amyloid -protein peptide (app) family according to TCDB.
  • Domain organization of [A4_HUMAN] by SWISSPFAM
  • Domain found in 1MWP: [A4_EXTRA ] by SMART
  • Alignments of the sequence of 1MWP with the sequences similar proteins can be viewed for 1MWP's classification [A4_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [A4_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1MWP
  • Community annotation for 1MWP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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