1MZ5 Hydrolase date Oct 05, 2002
title Trypanosoma Rangeli Sialidase
authors A.Buschiazzo, G.A.Tavares, O.Campetella, S.Spinelli, M.L.Cremona M.F.Amaya, A.C.C.Frasch, P.M.Alzari
compound source
Molecule: Sialidase
Chain: A
Fragment: Mature Sialidase
Ec: 3.2.1.18
Organism_scientific: Trypanosoma Rangeli
Organism_taxid: 5698
symmetry Space Group: P 21 21 21
R_factor 0.180 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.150 93.410 105.480 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand NAG enzyme Hydrolase E.C.3.2.1.18 BRENDA
related structures by homologous chain: 1MS4, 1N1V
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis of sialyltransferase activity in trypanosomal sialidases., Buschiazzo A, Tavares GA, Campetella O, Spinelli S, Cremona ML, Paris G, Amaya MF, Frasch AC, Alzari PM, EMBO J 2000 Jan 4;19(1):16-24. PMID:10619840
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (1mz5.pdb1.gz) 102 Kb
  • LPC: Ligand-Protein Contacts for 1MZ5
  • CSU: Contacts of Structural Units for 1MZ5
  • Likely Quarternary Molecular Structure file(s) for 1MZ5
  • Retrieve 1MZ5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MZ5 from S2C, [Save to disk]
  • View 1MZ5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MZ5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1MZ5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mz5a2, region A:1-403 [Jmol] [rasmolscript] [script source]
        - Domain d1mz5a1, region A:410-631 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mz5] [1mz5_A]
  • SWISS-PROT database: [O44049]
  • Domain organization of [O44049_TRYRA] by SWISSPFAM
  • Other resources with information on 1MZ5
  • Community annotation for 1MZ5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science