1N1D	Transferase	date	Oct 17, 2002
title	Glycerol-3-Phosphate Cytidylyltransferase Complexed With Cdp
authors	K.A.Pattridge, C.H.Weber, J.A.Friesen, S.Sankar, C.Kent, M.L.Ludw
compound		source
Molecule: Glycerol-3-Phosphate Cytidylyltransferase Chain: A, B, C, D Synonym: Gct, Cdp-Glycerol Pyrophosphorylase, Teichoic Acid Biosynthesis Protein D; Ec: 2.7.7.39 Engineered: Yes		Organism_scientific: Bacillus Subtilis Organism_taxid: 1423 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11a
symmetry	Space Group: P 1	R_factor 0.241 R_Free 0.294
crystal cell	length a length b length c angle alpha angle beta angle gamma 37.795 55.929 63.701 88.99 75.03 82.54
method	X-Ray Diffraction	resolution	2.00 Å
ligand	C2G, SO4	enzyme	Transferase E.C.2.7.7.39 BRENDA
related structures	by homologous chain: 1COZ
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Glycerol-3-phosphate cytidylyltransferase. Structural changes induced by binding of CDP-glycerol and the role of lysine residues in catalysis., Pattridge KA, Weber CH, Friesen JA, Sanker S, Kent C, Ludwig ML, J Biol Chem 2003 Dec 19;278(51):51863-71. Epub 2003 Sep 23. PMID:14506262

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk] Biological Unit Coordinates (1n1d.pdb1.gz) 46 Kb Biological Unit Coordinates (1n1d.pdb2.gz) 46 Kb LPC: Ligand-Protein Contacts for 1N1D CSU: Contacts of Structural Units for 1N1D Likely Quarternary Molecular Structure file(s) for 1N1D Structure Factors (467 Kb) Retrieve 1N1D in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1N1D from S2C, [Save to disk] Re-refined 1n1d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1N1D in 3D

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Visual 3D analysis of 1N1D

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1N1D, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1n1da_, region A [Jmol] [rasmolscript] [script source]     - Domain d1n1db_, region B [Jmol] [rasmolscript] [script source]     - Domain d1n1dc_, region C [Jmol] [rasmolscript] [script source]     - Domain d1n1dd_, region D [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1n1d] [1n1d_D] [1n1d_C] [1n1d_A] [1n1d_B] SWISS-PROT database: [P27623] Domain organization of [TAGD_BACSU] by SWISSPFAM

Other resources with information on 1N1D

Community annotation for 1N1D at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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