1N3H Signaling Protein date Oct 28, 2002
title Coupling Of Folding And Binding In The Ptb Domain Of The Signaling Protein Shc
authors A.Farooq, L.Zeng, K.S.Yan, K.S.Ravichandran, M.M.Zhou
compound source
Molecule: Shc Transforming Protein
Chain: A
Fragment: Ptb Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Shc
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
methodSolution NMR
related structures by homologous chain: 1OY2
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCoupling of folding and binding in the PTB domain of the signaling protein Shc., Farooq A, Zeng L, Yan KS, Ravichandran KS, Zhou MM, Structure (Camb) 2003 Aug;11(8):905-13. PMID:12906822
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1N3H
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1N3H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1N3H from S2C, [Save to disk]
  • View 1N3H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1N3H
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1N3H, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1n3ha_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1n3h from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1n3h_A] [1n3h]
  • SWISS-PROT database: [P29353]
  • Domain organization of [SHC1_HUMAN] by SWISSPFAM
  • Domain found in 1N3H: [PTB ] by SMART
  • Other resources with information on 1N3H
  • Community annotation for 1N3H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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