1N4P Transferase date Nov 01, 2002
title Protein Geranylgeranyltransferase Type-I Complexed With Gera Diphosphate
authors J.S.Taylor, T.S.Reid, P.J.Casey, L.S.Beese
compound source
Molecule: Protein Farnesyltransferasegeranylgeranyltransfe Subunit Alpha;
Chain: A, C, E, G, I, K
Synonym: Caax Farnesyltransferase Subunit Alpha,Ftase-Alpha Proteins Prenyltransferase Subunit Alpha,Type I Protein Ger Geranyltransferase Subunit Alpha,Ggtase-I-Alpha;
Ec: 2.5.1.58,2.5.1.59
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Gene: Fnta
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Atcc 63134

Molecule: Geranylgeranyl Transferase Type-1 Subunit Beta
Chain: B, D, F, H, J, L
Synonym: Geranylgeranyl Transferase Type I Subunit Beta,Ggt Beta,Type I Protein Geranyl-Geranyltransferase Subunit Beta
Ec: 2.5.1.59
Engineered: Yes

Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Gene: Pggt1b
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Atcc 63134

Molecule: Fusion Protein Consisting Of Transforming Protein Ras Related Protein Rap-2b;
Chain: M, N
Synonym: Kkksktkcvil Peptide
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: The Peptide Was Chemically Synthesized. The Geranylgeranyl Lipid Was Added By The Enzyme.
symmetry Space Group: C 1 2 1
R_factor 0.204 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
272.338 271.566 185.425 90.00 131.56 90.00
method X-Ray Diffractionresolution 2.65 Å
ligand CL, GER, GRG, ZN enzyme Transferase E.C.2.5.1.58 BRENDA
related structures by homologous chain: 1N4S, 1TNY
Gene
Ontology
ChainFunctionProcessComponent
A, K, E, C, I, G
  • acetylcholine receptor regul...


  • F, J, B, H, D, L


    Primary referenceStructure of mammalian protein geranylgeranyltransferase type-I., Taylor JS, Reid TS, Terry KL, Casey PJ, Beese LS, EMBO J 2003 Nov 17;22(22):5963-74. PMID:14609943
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (682 Kb) [Save to disk]
  • Biological Unit Coordinates (1n4p.pdb1.gz) 117 Kb
  • Biological Unit Coordinates (1n4p.pdb2.gz) 118 Kb
  • Biological Unit Coordinates (1n4p.pdb3.gz) 118 Kb
  • Biological Unit Coordinates (1n4p.pdb4.gz) 117 Kb
  • Biological Unit Coordinates (1n4p.pdb5.gz) 119 Kb
  • Biological Unit Coordinates (1n4p.pdb6.gz) 122 Kb
  • LPC: Ligand-Protein Contacts for 1N4P
  • CSU: Contacts of Structural Units for 1N4P
  • Likely Quarternary Molecular Structure file(s) for 1N4P
  • Structure Factors (3162 Kb)
  • Retrieve 1N4P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1N4P from S2C, [Save to disk]
  • Re-refined 1n4p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1N4P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1N4P
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1N4P, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1n4pa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1n4pb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1n4pc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1n4pd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1n4pe_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1n4pf_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1n4pg_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1n4ph_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1n4pi_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1n4pj_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1n4pk_, region K [Jmol] [rasmolscript] [script source]
        - Domain d1n4pl_, region L [Jmol] [rasmolscript] [script source]
  • Fold representative 1n4p from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1n4p_F] [1n4p_D] [1n4p_M] [1n4p_E] [1n4p_B] [1n4p_K] [1n4p_N] [1n4p_L] [1n4p_J] [1n4p_G] [1n4p_I] [1n4p_C] [1n4p_H] [1n4p_A] [1n4p]
  • SWISS-PROT database: [Q04631] [P53610]
  • Domain organization of [FNTA_RAT] [PGTB1_RAT] by SWISSPFAM
  • Other resources with information on 1N4P
  • Community annotation for 1N4P at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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