1N5U Plasma Protein date Nov 07, 2002
title X-Ray Study Of Human Serum Albumin Complexed With Heme
authors M.Wardell, Z.Wang, J.X.Ho, J.Robert, F.Ruker, J.Ruble, D.C.Carter
compound source
Molecule: Serum Albumin
Chain: A
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: C 1 2 1
R_factor 0.235 R_Free 0.280
crystal
cell
length a length b length c angle alpha angle beta angle gamma
183.116 37.909 94.832 90.00 105.04 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand HEM, MYR enzyme
related structures by homologous chain: 1E7A
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe atomic structure of human methemalbumin at 1.9 A., Wardell M, Wang Z, Ho JX, Robert J, Ruker F, Ruble J, Carter DC, Biochem Biophys Res Commun 2002 Mar 8;291(4):813-9. PMID:11866438
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk]
  • Biological Unit Coordinates (1n5u.pdb1.gz) 105 Kb
  • LPC: Ligand-Protein Contacts for 1N5U
  • CSU: Contacts of Structural Units for 1N5U
  • Likely Quarternary Molecular Structure file(s) for 1N5U
  • Structure Factors (604 Kb)
  • Retrieve 1N5U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1N5U from S2C, [Save to disk]
  • Re-refined 1n5u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1N5U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1N5U
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1N5U, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1n5ua2, region A:197-388 [Jmol] [rasmolscript] [script source]
        - Domain d1n5ua1, region A:2-196 [Jmol] [rasmolscript] [script source]
        - Domain d1n5ua3, region A:389-584 [Jmol] [rasmolscript] [script source]
  • Fold representative 1n5u from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1n5u] [1n5u_A]
  • SWISS-PROT database: [P02768]
  • Domain organization of [ALBU_HUMAN] by SWISSPFAM
  • Domain found in 1N5U: [ALBUMIN ] by SMART
  • Alignments of the sequence of 1N5U with the sequences similar proteins can be viewed for 1N5U's classification [ALBU_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [ALBU_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1N5U
  • Community annotation for 1N5U at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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