1N6X Hydrolase date Nov 12, 2002
title Rip-Phasing On Bovine Trypsin
authors R.B.G.Ravelli, H.K.S.Leiros, B.Pan, M.Caffrey, S.Mcsweeney
compound source
Molecule: Trypsinogen, Cationic
Chain: A
Synonym: Beta-Trypsin
Ec: 3.4.21.4
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Pancreas
symmetry Space Group: P 21 21 21
R_factor 0.138 R_Free 0.165
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.209 56.658 66.126 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand ABN, CA, GOL, SO4 enzyme Hydrolase E.C.3.4.21.4 BRENDA
related structures by homologous chain: 1GHZ, 1N6Y
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSpecific radiation damage can be used to solve macromolecular crystal structures., Ravelli RB, Schroder Leiros HK, Pan B, Caffrey M, McSweeney S, Structure (Camb) 2003 Feb;11(2):217-24. PMID:12575941
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk]
  • Biological Unit Coordinates (1n6x.pdb1.gz) 73 Kb
  • LPC: Ligand-Protein Contacts for 1N6X
  • CSU: Contacts of Structural Units for 1N6X
  • Likely Quarternary Molecular Structure file(s) for 1N6X
  • Retrieve 1N6X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1N6X from S2C, [Save to disk]
  • View 1N6X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1N6X
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1N6X from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1N6X, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1n6xa_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1n6x from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1n6x] [1n6x_A]
  • SWISS-PROT database: [P00760]
  • Domain organization of [TRY1_BOVIN] by SWISSPFAM
  • Domain found in 1N6X: [Tryp_SPc ] by SMART
  • Other resources with information on 1N6X
  • Community annotation for 1N6X at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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