1N7E Protein Binding date Nov 14, 2002
title Crystal Structure Of The Sixth Pdz Domain Of Grip1
authors Y.J.Im, S.H.Park, S.H.Rho, J.H.Lee, G.B.Kang, M.Sheng, E.Kim, S.H.E
compound source
Molecule: Ampa Receptor Interacting Protein Grip
Chain: A
Fragment: Sixth Pdz Domain
Synonym: Glutamate Receptor Interacting Protein 1
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Gene: Grip1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t
symmetry Space Group: P 65 2 2
R_factor 0.254 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.267 40.267 222.872 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.50 Å
related structures by homologous chain: 1N7F
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of GRIP1 PDZ6-peptide complex reveals the structural basis for class II PDZ target recognition and PDZ domain-mediated multimerization., Im YJ, Park SH, Rho SH, Lee JH, Kang GB, Sheng M, Kim E, Eom SH, J Biol Chem 2003 Mar 7;278(10):8501-7. PMID:12493751
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (21 Kb) [Save to disk]
  • Biological Unit Coordinates (1n7e.pdb1.gz) 17 Kb
  • CSU: Contacts of Structural Units for 1N7E
  • Likely Quarternary Molecular Structure file(s) for 1N7E
  • Structure Factors (151 Kb)
  • Retrieve 1N7E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1N7E from S2C, [Save to disk]
  • Re-refined 1n7e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1N7E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1N7E
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1N7E from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1N7E, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1n7ea_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1n7e] [1n7e_A]
  • SWISS-PROT database: [P97879]
  • Domain organization of [GRIP1_RAT] by SWISSPFAM
  • Domain found in 1N7E: [PDZ ] by SMART
  • Other resources with information on 1N7E
  • Community annotation for 1N7E at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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