1N8E	Blood Clotting	date	Nov 20, 2002
title	Fragment Double-D From Human Fibrin
authors	Z.Yang, L.Pandi, R.F.Doolittle
compound		source
Molecule: Fibrin Alphaalpha-E Chain Chain: A, D Fragment: Double-D Alpha Chain		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Other_details: Fibrinogen Prepared From Blood Bank Plasma
Molecule: Fibrin Beta Chain Chain: B, E Fragment: Double-D Beta Chain		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Other_details: Fibrinogen Prepared From Blood Bank Plasma
Molecule: Fibrin Gamma Chain Chain: C, F Fragment: Double-D Gamma Chain Synonym: Pro2061		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Other_details: Fibrinogen Prepared From Blood Bank Plasma
symmetry	Space Group: P 21 21 21	R_factor 0.415 R_Free 0.416
crystal cell	length a length b length c angle alpha angle beta angle gamma 50.000 125.350 312.060 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	4.50 Å
Gene Ontology	Chain Function Process Component A, D E, B F, C
Primary reference	The crystal structure of fragment double-D from cross-linked lamprey fibrin reveals isopeptide linkages across an unexpected D-D interface., Yang Z, Pandi L, Doolittle RF, Biochemistry 2002 Dec 31;41(52):15610-7. PMID:12501189

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk] Biological Unit Coordinates (1n8e.pdb1.gz) 26 Kb CSU: Contacts of Structural Units for 1N8E Likely Quarternary Molecular Structure file(s) for 1N8E Retrieve 1N8E in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1N8E from S2C, [Save to disk]

View 1N8E in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1N8E

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1N8E, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1n8ea_, region A [Jmol] [rasmolscript] [script source]     - Domain d1n8eb2, region B:151-199 [Jmol] [rasmolscript] [script source]     - Domain d1n8eb1, region B:200-457 [Jmol] [rasmolscript] [script source]     - Domain d1n8ec1, region C:142-391 [Jmol] [rasmolscript] [script source]     - Domain d1n8ec2, region C:97-141 [Jmol] [rasmolscript] [script source]     - Domain d1n8ed_, region D [Jmol] [rasmolscript] [script source]     - Domain d1n8ee2, region E:151-199 [Jmol] [rasmolscript] [script source]     - Domain d1n8ee1, region E:200-457 [Jmol] [rasmolscript] [script source]     - Domain d1n8ef1, region F:142-391 [Jmol] [rasmolscript] [script source]     - Domain d1n8ef2, region F:97-141 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1n8e_F] [1n8e] [1n8e_A] [1n8e_B] [1n8e_E] [1n8e_C] [1n8e_D] SWISS-PROT database: [P02671] [P02675] [P02679] Domain organization of [FIBA_HUMAN] [FIBB_HUMAN] [FIBG_HUMAN] by SWISSPFAM Domain found in 1N8E: [FBG ] by SMART

Other resources with information on 1N8E

Community annotation for 1N8E at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---