1N8E Blood Clotting date Nov 20, 2002
title Fragment Double-D From Human Fibrin
authors Z.Yang, L.Pandi, R.F.Doolittle
compound source
Molecule: Fibrin Alphaalpha-E Chain
Chain: A, D
Fragment: Double-D Alpha Chain
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Fibrinogen Prepared From Blood Bank Plasma

Molecule: Fibrin Beta Chain
Chain: B, E
Fragment: Double-D Beta Chain

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Fibrinogen Prepared From Blood Bank Plasma

Molecule: Fibrin Gamma Chain
Chain: C, F
Fragment: Double-D Gamma Chain
Synonym: Pro2061

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Fibrinogen Prepared From Blood Bank Plasma
symmetry Space Group: P 21 21 21
R_factor 0.415 R_Free 0.416
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.000 125.350 312.060 90.00 90.00 90.00
method X-Ray Diffractionresolution 4.50 Å
Primary referenceThe crystal structure of fragment double-D from cross-linked lamprey fibrin reveals isopeptide linkages across an unexpected D-D interface., Yang Z, Pandi L, Doolittle RF, Biochemistry 2002 Dec 31;41(52):15610-7. PMID:12501189
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk]
  • Biological Unit Coordinates (1n8e.pdb1.gz) 27 Kb
  • CSU: Contacts of Structural Units for 1N8E
  • Likely Quarternary Molecular Structure file(s) for 1N8E
  • Retrieve 1N8E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1N8E from S2C, [Save to disk]
  • View 1N8E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1N8E
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1N8E, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1n8ea_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1n8eb2, region B:151-199 [Jmol] [rasmolscript] [script source]
        - Domain d1n8eb1, region B:200-457 [Jmol] [rasmolscript] [script source]
        - Domain d1n8ec1, region C:142-391 [Jmol] [rasmolscript] [script source]
        - Domain d1n8ec2, region C:97-141 [Jmol] [rasmolscript] [script source]
        - Domain d1n8ed_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1n8ee2, region E:151-199 [Jmol] [rasmolscript] [script source]
        - Domain d1n8ee1, region E:200-457 [Jmol] [rasmolscript] [script source]
        - Domain d1n8ef1, region F:142-391 [Jmol] [rasmolscript] [script source]
        - Domain d1n8ef2, region F:97-141 [Jmol] [rasmolscript] [script source]
  • Fold representative 1n8e from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1n8e_F] [1n8e] [1n8e_A] [1n8e_B] [1n8e_E] [1n8e_C] [1n8e_D]
  • SWISS-PROT database: [P02671] [P02675] [P02679]
  • Domain organization of [FIBA_HUMAN] [FIBB_HUMAN] [FIBG_HUMAN] by SWISSPFAM
  • Domain found in 1N8E: [FBG ] by SMART
  • Other resources with information on 1N8E
  • Community annotation for 1N8E at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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