1NA8 Signaling Protein, Membrane Protein date Nov 27, 2002
title Crystal Structure Of Adp-Ribosylation Factor Binding Protein
authors W.W.Lui, B.M.Collins, J.Hirst, A.Motley, C.Millar, P.Schu, D.J.Owe M.S.Robinson
compound source
Molecule: Adp-Ribosylation Factor Binding Protein Gga1
Chain: A, B
Fragment: Appendage Domain, Residues 494-639 Of Sws Q9ujy5
Synonym: Gga1 Appendage Domain; Golgi-Localized, Gamma Ear- Containing, Arf-Binding Protein 1; Gamma-Adaptin Related Pr
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet
symmetry Space Group: P 32 2 1
R_factor 0.216 R_Free 0.279
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.426 65.426 142.725 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
related structures by homologous chain: 1OM9, 1P4U
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceBinding partners for the COOH-terminal appendage domains of the GGAs and gamma-adaptin., Lui WW, Collins BM, Hirst J, Motley A, Millar C, Schu P, Owen DJ, Robinson MS, Mol Biol Cell 2003 Jun;14(6):2385-98. Epub 2003 Mar 20. PMID:12808037
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (1na8.pdb1.gz) 50 Kb
  • CSU: Contacts of Structural Units for 1NA8
  • Likely Quarternary Molecular Structure file(s) for 1NA8
  • Structure Factors (113 Kb)
  • Retrieve 1NA8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NA8 from S2C, [Save to disk]
  • Re-refined 1na8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1NA8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1NA8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1NA8, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1na8a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1na8b_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1na8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1na8] [1na8_A] [1na8_B]
  • SWISS-PROT database: [Q9UJY5]
  • Domain organization of [GGA1_HUMAN] by SWISSPFAM
  • Domain found in 1NA8: [Alpha_adaptinC2 ] by SMART
  • Other resources with information on 1NA8
  • Community annotation for 1NA8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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