1NBQ	Immune System	date	Dec 03, 2002
title	Crystal Structure Of Human Junctional Adhesion Molecule Type 1
authors	A.E.Prota, J.A.Campbell, P.Schelling, J.C.Forrest, M.J.Watson, T.R.Peters, M.Aurrand-Lions, B.A.Imhof, T.S.Dermody, T.Stehle
compound		source
Molecule: Junctional Adhesion Molecule 1 Chain: A, B Synonym: Jam; Platelet Adhesion Molecule 1; Pam-1 Platelet F11 Receptor; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Jam1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid
symmetry	Space Group: C 1 2 1	R_factor 0.220 R_Free 0.305
crystal cell	length a length b length c angle alpha angle beta angle gamma 116.800 61.800 82.900 90.00 120.01 90.00
method	X-Ray Diffraction	resolution	2.90 Å
related structures	by homologous chain: 1F97
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structure of human junctional adhesion molecule 1: implications for reovirus binding., Prota AE, Campbell JA, Schelling P, Forrest JC, Watson MJ, Peters TR, Aurrand-Lions M, Imhof BA, Dermody TS, Stehle T, Proc Natl Acad Sci U S A 2003 Apr 29;100(9):5366-71. PMID:12697893

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk] Biological Unit Coordinates (1nbq.pdb1.gz) 68 Kb CSU: Contacts of Structural Units for 1NBQ Likely Quarternary Molecular Structure file(s) for 1NBQ Retrieve 1NBQ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1NBQ from S2C, [Save to disk]

View 1NBQ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1NBQ

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1NBQ, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1nbqa2, region A:130-233 [Jmol] [rasmolscript] [script source]     - Domain d1nbqa1, region A:25-129 [Jmol] [rasmolscript] [script source]     - Domain d1nbqb2, region B:130-233 [Jmol] [rasmolscript] [script source]     - Domain d1nbqb1, region B:26-129 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1nbq_A] [1nbq] [1nbq_B] SWISS-PROT database: [Q9Y624] Domain organization of [JAM1_HUMAN] by SWISSPFAM Domains found in 1NBQ: [IG_like] [IGv ] by SMART

Other resources with information on 1NBQ

Community annotation for 1NBQ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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