1ND5	Hydrolase	date	Dec 07, 2002
title	Crystal Structures Of Human Prostatic Acid Phosphatase In Co A Phosphate Ion And Alpha-Benzylaminobenzylphosphonic Acid Mechanistic Picture And Offer New Insights Into Inhibitor D
authors	E.Ortlund, M.W.Lacount, L.Lebioda
compound		source
Molecule: Prostatic Acid Phosphatase Chain: A, B, C, D Ec: 3.1.3.2		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Tissue: Semen
symmetry	Space Group: P 21 21 21	R_factor 0.205 R_Free 0.279
crystal cell	length a length b length c angle alpha angle beta angle gamma 120.100 204.860 71.220 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.90 Å
ligand	1PE, 2BF, MAN, NAG, NDG	enzyme	Hydrolase E.C.3.1.3.2 BRENDA
related structures	by homologous chain: 1ND6, 2HPA
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Crystal structures of human prostatic acid phosphatase in complex with a phosphate ion and alpha-benzylaminobenzylphosphonic acid update the mechanistic picture and offer new insights into inhibitor design., Ortlund E, LaCount MW, Lebioda L, Biochemistry 2003 Jan 21;42(2):383-9. PMID:12525165

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (242 Kb) [Save to disk] Biological Unit Coordinates (1nd5.pdb1.gz) 176 Kb Biological Unit Coordinates (1nd5.pdb2.gz) 118 Kb LPC: Ligand-Protein Contacts for 1ND5 CSU: Contacts of Structural Units for 1ND5 Likely Quarternary Molecular Structure file(s) for 1ND5 Retrieve 1ND5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1ND5 from S2C, [Save to disk]

View 1ND5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1ND5

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1ND5, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1nd5a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1nd5b_, region B [Jmol] [rasmolscript] [script source]     - Domain d1nd5c_, region C [Jmol] [rasmolscript] [script source]     - Domain d1nd5d_, region D [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1nd5_C] [1nd5_D] [1nd5] [1nd5_A] [1nd5_B] SWISS-PROT database: [P15309] Domain organization of [PPAP_HUMAN] by SWISSPFAM

Other resources with information on 1ND5

Community annotation for 1ND5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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