1NGL Transport Protein date Feb 23, 1999
title Human Neutrophil Gelatinase-Associated Lipocalin (Hngal), Regularised Average Nmr Structure
authors M.Coles, T.Diercks, B.Muehlenweg, S.Bartsch, V.Zoelzer, H.Tschesche, H.Kessler
compound source
Molecule: Protein (Ngal)
Chain: A
Fragment: Mature Sequence
Synonym: Hngal, Hnl
Engineered: Yes
Other_details: Methionine Precedes Mature Protein Sequence
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell: Neutrophil
Cellular_location: Extracellular Matrix
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21[De3]
Expression_system_vector: Pet11a
methodSolution NMR
related structures by homologous chain: 1DFV
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe solution structure and dynamics of human neutrophil gelatinase-associated lipocalin., Coles M, Diercks T, Muehlenweg B, Bartsch S, Zolzer V, Tschesche H, Kessler H, J Mol Biol 1999 May 28;289(1):139-57. PMID:10339412
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1NGL
  • Original NMR restraints for 1NGL from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1NGL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NGL from S2C, [Save to disk]
  • View 1NGL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1NGL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1NGL, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ngla_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1ngl from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ngl] [1ngl_A]
  • SWISS-PROT database: [P80188]
  • Domain organization of [NGAL_HUMAN] by SWISSPFAM
  • Other resources with information on 1NGL
  • Community annotation for 1NGL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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