1NGP Immunoglobulin date Jun 23, 1995
title N1g9 (Igg1-Lambda) Fab Fragment Complexed With (4-Hydroxy-3- Nitrophenyl) Acetate
authors R.Mizutani, Y.Satow
compound source
Molecule: N1g9 (Igg1-Lambda)
Chain: L
Fragment: Fab Fragment
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Strain: C57bl6

Molecule: N1g9 (Igg1-Lambda)
Chain: H
Fragment: Fab Fragment
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Strain: C57bl6
symmetry Space Group: P 41 21 2
R_factor 0.196 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
110.691 110.691 98.250 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand NPA, SO4 enzyme
related structures by homologous chain: 1BJ1, 1KEG, 1NGQ
Primary referenceThree-dimensional structures of the Fab fragment of murine N1G9 antibody from the primary immune response and of its complex with (4-hydroxy-3-nitrophenyl)acetate., Mizutani R, Miura K, Nakayama T, Shimada I, Arata Y, Satow Y, J Mol Biol 1995 Nov 24;254(2):208-22. PMID:7490744
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (1ngp.pdb1.gz) 70 Kb
  • LPC: Ligand-Protein Contacts for 1NGP
  • CSU: Contacts of Structural Units for 1NGP
  • Likely Quarternary Molecular Structure file(s) for 1NGP
  • Retrieve 1NGP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NGP from S2C, [Save to disk]
    • View 1NGP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1NGP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1NGP, from MSDmotif at EBI
  • Genome occurence of 1NGP's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ngph1, region H:1-120 [Jmol] [rasmolscript] [script source]
        - Domain d1ngph2, region H:121-220 [Jmol] [rasmolscript] [script source]
        - Domain d1ngpl1, region L:1-109 [Jmol] [rasmolscript] [script source]
        - Domain d1ngpl2, region L:110-211 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ngp_H] [1ngp_L] [1ngp]
  • SWISS-PROT database: [P01751] [Q6PF95]
  • Domain organization of [HVM07_MOUSE] [Q6PF95_MOUSE] by SWISSPFAM
  • Domains found in 1NGP: [IG_like] [IGv ] by SMART
    • Other resources with information on 1NGP
  • Community annotation for 1NGP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1NGP from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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