1NJO The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP) date
authors Bashan, A., Agmon, I., Zarivatch, R., Schluenzen, F., Harms, J.M., Berisio, R., Bartels, H., Hansen, H.A., Yonath, A.
compound source
symmetry
R_factor
R_Free 0.297
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.70
ligand PPU enzyme
Primary referenceStructural basis of the ribosomal machinery for peptide bond formation, translocation, and nascent chain progression., Bashan A, Agmon I, Zarivach R, Schluenzen F, Harms J, Berisio R, Bartels H, Franceschi F, Auerbach T, Hansen HA, Kossoy E, Kessler M, Yonath A, Mol Cell 2003 Jan;11(1):91-102. PMID:12535524
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1003 Kb) [Save to disk]
  • Biological Unit Coordinates (1njo.pdb1.gz) 999 Kb
  • LPC: Ligand-Protein Contacts for 1NJO
  • CSU: Contacts of Structural Units for 1NJO
  • Likely Quarternary Molecular Structure file(s) for 1NJO
  • Retrieve 1NJO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NJO from S2C, [Save to disk]
    • View 1NJO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1NJO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1NJO, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1njo0_, region 0 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1njo_5] [1njo_0] [1njo]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1NJO
  • Community annotation for 1NJO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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