1NM6	Blood Clotting Hydrolase Inhibitor	date	Jan 09, 2003
title	Thrombin In Complex With Selective Macrocyclic Inhibitor At
authors	P.G.Nantermet, J.C.Barrow, C.L.Newton, J.M.Pellicore, M.Young, S. B.J.Lucas, J.A.Krueger, D.R.Mcmasters, Y.Yan, L.C.Kuo, J.P.Vacca H.G.Selnick
compound		source
Molecule: Thrombin Chain: A Synonym: Coagulation Factor II Ec: 3.4.21.5		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Organ: Plasma From Blood
Molecule: Hirudin Chain: B Engineered: Yes Other_details: 10 Aa Hirudin Analogue		Synthetic: Yes
symmetry	Space Group: C 1 2 1	R_factor 0.216 R_Free 0.238
crystal cell	length a length b length c angle alpha angle beta angle gamma 69.700 71.400 72.300 90.00 100.50 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	L86, TYS BindingDB	enzyme	Hydrolase E.C.3.4.21.5 BRENDA
related structures	by homologous chain: 1JOU, 1QBV
Gene Ontology	Chain Function Process Component A
Primary reference	Design and synthesis of potent and selective macrocyclic thrombin inhibitors., Nantermet PG, Barrow JC, Newton CL, Pellicore JM, Young M, Lewis SD, Lucas BJ, Krueger JA, McMasters DR, Yan Y, Kuo LC, Vacca JP, Selnick HG, Bioorg Med Chem Lett 2003 Aug 18;13(16):2781-4. PMID:12873514

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk] Biological Unit Coordinates (1nm6.pdb1.gz) 53 Kb LPC: Ligand-Protein Contacts for 1NM6 CSU: Contacts of Structural Units for 1NM6 Likely Quarternary Molecular Structure file(s) for 1NM6 Retrieve 1NM6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1NM6 from S2C, [Save to disk]

View 1NM6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1NM6

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1NM6, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1nm6a_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1nm6_A] [1nm6] [1nm6_B] SWISS-PROT database: [P00734] Domain organization of [THRB_HUMAN] by SWISSPFAM Domain found in 1NM6: [Tryp_SPc ] by SMART

Other resources with information on 1NM6

Community annotation for 1NM6 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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