OCA Atlas for 1NN8

1NN8

Virus Receptor

date

Jan 13, 2003

title

Cryoem Structure Of Poliovirus Receptor Bound To Poliovirus

authors

Y.He, S.Mueller, P.R.Chipman, C.M.Bator, X.Peng, V.D.Bowman, S.Mukhopadhyay, E.Wimmer, R.J.Kuhn, M.G.Rossmann

compound

source

Molecule: Poliovirus Receptor
Chain: R, S, T
Synonym: Cd155 Antigen
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cellular_location: 293 Cells

Molecule: Coat Protein Vp1
Chain: 1
Engineered: Yes

Organism_scientific: Human Poliovirus 1 Mahoney
Organism_taxid: 12081
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cellular_location: Hela Cells

Molecule: Coat Protein Vp2
Chain: 2
Engineered: Yes

Molecule: Coat Protein Vp3
Chain: 3
Engineered: Yes

Molecule: Coat Protein Vp4
Chain: 4
Engineered: Yes

symmetry

Space Group: P 1

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
1.000	1.000	1.000	90.00	90.00	90.00

method

Electron Microscopy

resolution

15.00 Å

ligand

MYR

enzyme

Gene
Ontology

Chain	Function	Process	Component
1, 3, 2
4

Primary reference

Complexes of poliovirus serotypes with their common cellular receptor, CD155., He Y, Mueller S, Chipman PR, Bator CM, Peng X, Bowman VD, Mukhopadhyay S, Wimmer E, Kuhn RJ, Rossmann MG, J Virol 2003 Apr;77(8):4827-35. PMID:12663789

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]

Biological Unit Coordinates (1nn8.pdb1.gz) 1988 Kb

LPC: Ligand-Protein Contacts for 1NN8

CSU: Contacts of Structural Units for 1NN8

Likely Quarternary Molecular Structure file(s) for 1NN8

Retrieve 1NN8 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1NN8 from S2C, [Save to disk]

View 1NN8 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1NN8

VIPERdb: visual, structural and computational analysis of 1NN8

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 1NN8, from MSDmotif at EBI

Classification of representative domains in scop (Structural Classification of Proteins)
- Domain d1nn81_, region 1 [Jmol] [rasmolscript] [script source]
- Domain d1nn82_, region 2 [Jmol] [rasmolscript] [script source]
- Domain d1nn83_, region 3 [Jmol] [rasmolscript] [script source]
- Domain d1nn84_, region 4 [Jmol] [rasmolscript] [script source]
- Domain d1nn8r_, region R [Jmol] [rasmolscript] [script source]
- Domain d1nn8s_, region S [Jmol] [rasmolscript] [script source]
- Domain d1nn8t_, region T [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1nn8_1] [1nn8_S] [1nn8_T] [1nn8] [1nn8_R] [1nn8_2] [1nn8_4] [1nn8_3]

SWISS-PROT database: [P03300] [P15151]

Domain organization of [POLG_POL1M] [PVR_HUMAN] by SWISSPFAM

Domain found in 1NN8: [IGv ] by SMART

Other resources with information on 1NN8

Community annotation for 1NN8 at PDBWiki (http://pdbwiki.org)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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