1NOY	Transferase Dna	date	Feb 16, 1996
title	Dna Polymerase (E.C.2.7.7.7)Dna Complex
authors	J.Wang, P.Yu, T.C.Lin, W.H.Konigsberg, T.A.Steitz
compound		source
Molecule: Dna (5'-D(Tptpt)-3') Chain: S Engineered: Yes		Synthetic: Yes
Molecule: Protein (Dna Polymerase (E.C.2.7.7.7)) Chain: A, B Engineered: Yes		Organism_scientific: Enterobacteria Phage T4 Organism_taxid: 10665 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 2	R_factor 0.222 R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 114.701 109.656 70.268 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	MN, ZN	enzyme	Transferase E.C.2.7.7.7 BRENDA
related structures	by homologous chain: 1IH7, 1NOZ
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structures of an NH2-terminal fragment of T4 DNA polymerase and its complexes with single-stranded DNA and with divalent metal ions., Wang J, Yu P, Lin TC, Konigsberg WH, Steitz TA, Biochemistry 1996 Jun 25;35(25):8110-9. PMID:8679562

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (128 Kb) [Save to disk] Biological Unit Coordinates (1noy.pdb1.gz) 123 Kb LPC: Ligand-Protein Contacts for 1NOY CSU: Contacts of Structural Units for 1NOY Likely Quarternary Molecular Structure file(s) for 1NOY Structure Factors (188 Kb) Retrieve 1NOY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1NOY from S2C, [Save to disk] Re-refined 1noy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1NOY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1NOY

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1NOY, from MSDmotif at EBI Genome occurence of 1NOY's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1noya_, region A [Jmol] [rasmolscript] [script source]     - Domain d1noyb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1noy] [1noy_A] [1noy_S] [1noy_B] SWISS-PROT database: [P04415] Domain organization of [DPOL_BPT4] by SWISSPFAM Domain found in 1NOY: [POLBc ] by SMART

Other resources with information on 1NOY

Community annotation for 1NOY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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