1NOY Transferase Dna date Feb 16, 1996
title Dna Polymerase (E.C.2.7.7.7)Dna Complex
authors J.Wang, P.Yu, T.C.Lin, W.H.Konigsberg, T.A.Steitz
compound source
Molecule: Dna (5'-D(Tptpt)-3')
Chain: S
Engineered: Yes
Synthetic: Yes

Molecule: Protein (Dna Polymerase (E.C.2.7.7.7))
Chain: A, B
Engineered: Yes

Organism_scientific: Enterobacteria Phage T4
Organism_taxid: 10665
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 2
R_factor 0.222 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
114.701 109.656 70.268 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand MN, ZN enzyme Transferase E.C.2.7.7.7 BRENDA
related structures by homologous chain: 1IH7, 1NOZ
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structures of an NH2-terminal fragment of T4 DNA polymerase and its complexes with single-stranded DNA and with divalent metal ions., Wang J, Yu P, Lin TC, Konigsberg WH, Steitz TA, Biochemistry 1996 Jun 25;35(25):8110-9. PMID:8679562
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (128 Kb) [Save to disk]
  • Biological Unit Coordinates (1noy.pdb1.gz) 123 Kb
  • LPC: Ligand-Protein Contacts for 1NOY
  • CSU: Contacts of Structural Units for 1NOY
  • Likely Quarternary Molecular Structure file(s) for 1NOY
  • Structure Factors (188 Kb)
  • Retrieve 1NOY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NOY from S2C, [Save to disk]
  • Re-refined 1noy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1NOY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1NOY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1NOY, from MSDmotif at EBI
  • Genome occurence of 1NOY's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1noya_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1noyb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1noy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1noy] [1noy_A] [1noy_S] [1noy_B]
  • SWISS-PROT database: [P04415]
  • Domain organization of [DPOL_BPT4] by SWISSPFAM
  • Domain found in 1NOY: [POLBc ] by SMART
  • Other resources with information on 1NOY
  • Community annotation for 1NOY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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