1NR3 Transcription date Jan 23, 2003
title Solution Structure Of The Protein Mth0916: The Northeast Str Genomics Consortium Target Tt212
authors Y.Shen, G.Liu, R.Bhaskaran, A.Yee, C.Arrowsmith, T.Szyperski, Nort Structural Genomics Consortium (Nesg)
compound source
Molecule: Dna-Binding Protein Tfx
Chain: A
Synonym: Mth0916
Engineered: Yes
 Organism_scientific: Methanothermobacter Thermautotrophicus
Organism_taxid: 145262
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
note 1NR3 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (600 Kb) [Save to disk]
  • Biological Unit Coordinates (1nr3.pdb1.gz) 31 Kb
  • CSU: Contacts of Structural Units for 1NR3
  • Original NMR restraints for 1NR3 from PDB
  • Retrieve 1NR3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NR3 from S2C, [Save to disk]
    • View 1NR3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1NR3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1NR3, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1nr3a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1nr3] [1nr3_A]
  • SWISS-PROT database: [O27001]
  • Domain organization of [TFX_METTH] by SWISSPFAM
    • Other resources with information on 1NR3
  • Community annotation for 1NR3 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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