1NR4 Cytokine date Jan 23, 2003
title High Resolution Crystal Structures Of Thymus And Activation- Chemokine
authors O.A.Asojo, C.Boulegue, D.M.Hoover, W.Lu, J.Lubkowski
compound source
Molecule: Thymus And Activation-Regulated Chemokine
Chain: A, B, C, D, E, F, G, H
Synonym: Small Inducible Cytokine A17; Ccl17; Cc Chemokine Cell-Directed Cc;
Engineered: Yes
Synthetic: Yes
Other_details: This Sequence Occurs Naturally In Humans
symmetry Space Group: P 1
R_factor 0.199 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.350 56.525 76.616 69.97 85.56 72.74
method X-Ray Diffractionresolution 1.72 Å
ligand SO4 enzyme
note 1NR4 is a representative structure
related structures by homologous chain: 1NR2
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Primary referenceStructures of thymus and activation-regulated chemokine (TARC)., Asojo OA, Boulegue C, Hoover DM, Lu W, Lubkowski J, Acta Crystallogr D Biol Crystallogr 2003 Jul;59(Pt 7):1165-73. PMID:12832759
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (1nr4.pdb1.gz) 26 Kb
  • Biological Unit Coordinates (1nr4.pdb2.gz) 26 Kb
  • Biological Unit Coordinates (1nr4.pdb3.gz) 27 Kb
  • Biological Unit Coordinates (1nr4.pdb4.gz) 25 Kb
  • Biological Unit Coordinates (1nr4.pdb5.gz) 99 Kb
  • LPC: Ligand-Protein Contacts for 1NR4
  • CSU: Contacts of Structural Units for 1NR4
  • Likely Quarternary Molecular Structure file(s) for 1NR4
  • Structure Factors (497 Kb)
  • Retrieve 1NR4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NR4 from S2C, [Save to disk]
  • Re-refined 1nr4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1NR4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1NR4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1NR4, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1nr4a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1nr4b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1nr4c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1nr4d_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1nr4e_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1nr4f_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1nr4g_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1nr4h_, region H [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1nr4_F] [1nr4_D] [1nr4_H] [1nr4_A] [1nr4_E] [1nr4_C] [1nr4] [1nr4_B] [1nr4_G]
  • SWISS-PROT database: [Q92583]
  • Domain organization of [CCL17_HUMAN] by SWISSPFAM
  • Domain found in 1NR4: [SCY ] by SMART
  • Other resources with information on 1NR4
  • Community annotation for 1NR4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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