1NRV Signaling Protein date Jan 25, 2003
title Crystal Structure Of The Sh2 Domain Of Grb10
authors E.G.Stein, S.R.Hubbard
compound source
Molecule: Growth Factor Receptor-Bound Protein 10
Chain: A, B
Fragment: Sh2 Domain
Synonym: Grb10 Adapter Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Grb10 Or Grbir Or Kiaa0207
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21
symmetry Space Group: P 1 21 1
R_factor 0.224 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
28.820 49.040 79.610 90.00 96.62 90.00
method X-Ray Diffractionresolution 1.65 Å
note 1NRV is a representative structure
related structures by homologous chain: 1MW4
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis for dimerization of the Grb10 Src homology 2 domain. Implications for ligand specificity., Stein EG, Ghirlando R, Hubbard SR, J Biol Chem 2003 Apr 11;278(15):13257-64. PMID:12551896
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (1nrv.pdb1.gz) 36 Kb
  • CSU: Contacts of Structural Units for 1NRV
  • Likely Quarternary Molecular Structure file(s) for 1NRV
  • Structure Factors (193 Kb)
  • Retrieve 1NRV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NRV from S2C, [Save to disk]
  • Re-refined 1nrv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1NRV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1NRV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1NRV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1nrva_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1nrvb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1nrv_B] [1nrv] [1nrv_A]
  • SWISS-PROT database: [Q13322]
  • Domain organization of [GRB10_HUMAN] by SWISSPFAM
  • Domain found in 1NRV: [SH2 ] by SMART
  • Other resources with information on 1NRV
  • Community annotation for 1NRV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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