1NST Sulfotransferase date Sep 07, 1998
title The Sulfotransferase Domain Of Human Haparin Sulfate N-Deace Sulfotransferase
authors Y.Kakuta, L.C.Pedersen, M.Negishi
compound source
Molecule: Heparan Sulfate N-Deacetylasen-Sulfotransferase
Chain: A
Fragment: Sulfotransferase Domain
Synonym: Nst1
Ec: 2.8.2.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cellular_location: Golgi Membrane
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh5a
Expression_system_cellular_location: Cytoplasm
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t3
symmetry Space Group: P 1 21 1
R_factor 0.210 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.417 54.501 68.938 90.00 100.05 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand A3P enzyme Transferase E.C.2.8.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the sulfotransferase domain of human heparan sulfate N-deacetylase/ N-sulfotransferase 1., Kakuta Y, Sueyoshi T, Negishi M, Pedersen LC, J Biol Chem 1999 Apr 16;274(16):10673-6. PMID:10196134
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (1nst.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 1NST
  • CSU: Contacts of Structural Units for 1NST
  • Likely Quarternary Molecular Structure file(s) for 1NST
  • Retrieve 1NST in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NST from S2C, [Save to disk]
  • View 1NST in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1NST
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1NST, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1nsta_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1nst] [1nst_A]
  • SWISS-PROT database: [P52848]
  • Domain organization of [NDST1_HUMAN] by SWISSPFAM
  • Other resources with information on 1NST
  • Community annotation for 1NST at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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