1NUV The Leadzyme Ribozyme Bound to Mg(H2O)6(II) and Sr(II) at 1.8 A resolution date
authors Wedekind, J.E., Mckay, D.B.
compound source
symmetry
R_factor
R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.81
ligand MG, SR enzyme
Primary referenceCrystal structure of the leadzyme at 1.8 A resolution: metal ion binding and the implications for catalytic mechanism and allo site ion regulation., Wedekind JE, McKay DB, Biochemistry 2003 Aug 19;42(32):9554-63. PMID:12911297
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (1nuv.pdb1.gz) 14 Kb
  • Biological Unit Coordinates (1nuv.pdb2.gz) 14 Kb
  • Biological Unit Coordinates (1nuv.pdb3.gz) 13 Kb
  • Biological Unit Coordinates (1nuv.pdb4.gz) 14 Kb
  • LPC: Ligand-Protein Contacts for 1NUV
  • CSU: Contacts of Structural Units for 1NUV
  • Likely Quarternary Molecular Structure file(s) for 1NUV
  • Structure Factors (211 Kb)
  • Retrieve 1NUV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NUV from S2C, [Save to disk]
  • Re-refined 1nuv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1NUV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1NUV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1NUV, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1nuv_A] [1nuv_C] [1nuv_H] [1nuv] [1nuv_G] [1nuv_F] [1nuv_E] [1nuv_B] [1nuv_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1NUV
  • Community annotation for 1NUV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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