1NW3 Transferase date Feb 05, 2003
title Structure Of The Catalytic Domain Of Human Dot1l, A Non-Set Nucleosomal Histone Methyltransferase
authors J.R.Min, Q.Feng, Z.H.Li, Y.Zhang, R.M.Xu
compound source
Molecule: Histone Methyltransferase Dot1l
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dot1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-Kg
symmetry Space Group: P 65
R_factor 0.204 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
152.800 152.800 50.810 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand ACT, SAM, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the catalytic domain of human DOT1L, a non-SET domain nucleosomal histone methyltransferase., Min J, Feng Q, Li Z, Zhang Y, Xu RM, Cell 2003 Mar 7;112(5):711-23. PMID:12628190
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (1nw3.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 1NW3
  • CSU: Contacts of Structural Units for 1NW3
  • Likely Quarternary Molecular Structure file(s) for 1NW3
  • Structure Factors (346 Kb)
  • Retrieve 1NW3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NW3 from S2C, [Save to disk]
  • Re-refined 1nw3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1NW3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1NW3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1NW3, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1nw3a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1nw3 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1nw3_A] [1nw3]
  • SWISS-PROT database: [Q8TEK3]
  • Domain organization of [DOT1L_HUMAN] by SWISSPFAM
  • Other resources with information on 1NW3
  • Community annotation for 1NW3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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