1NWV Biosynthetic Protein date Feb 07, 2003
title Solution Structure Of A Functionally Active Component Of Decay Accelerating Factor
authors S.Uhrinova, F.Lin, G.Ball, K.Bromek, D.Uhrin, M.E.Medof, P.N.Barlow
compound source
Molecule: Complement Decay-Accelerating Factor
Chain: A
Synonym: Cd55 Antigen
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Daf Or Cr Or Cd55
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ppiczalphaa
methodSolution NMR
related structures by homologous chain: 1H2Q
Primary referenceSolution structure of a functionally active fragment of decay-accelerating factor., Uhrinova S, Lin F, Ball G, Bromek K, Uhrin D, Medof ME, Barlow PN, Proc Natl Acad Sci U S A 2003 Apr 15;100(8):4718-23. Epub 2003 Apr 2. PMID:12672958
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1420 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1NWV
  • Original NMR restraints for 1NWV from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1NWV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NWV from S2C, [Save to disk]
  • View 1NWV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1NWV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1NWV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1nwva2, region A:128-189 [Jmol] [rasmolscript] [script source]
        - Domain d1nwva1, region A:61-127 [Jmol] [rasmolscript] [script source]
  • Fold representative 1nwv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1nwv_A] [1nwv]
  • SWISS-PROT database: [P08174]
  • Domain organization of [DAF_HUMAN] by SWISSPFAM
  • Domain found in 1NWV: [CCP ] by SMART
  • Other resources with information on 1NWV
  • Community annotation for 1NWV at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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