1NWY Ribosome date Feb 07, 2003
title Complex Of The Large Ribosomal Subunit From Deinococcus Radiodurans With Azithromycin
authors F.Schluenzen, J.Harms, F.Franceschi, H.A.S.Hansen, H.Bartels, R.Zarivach, A.Yonath
compound source
Molecule: 23s Ribosomal Rrna
Chain
Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299

Molecule: 5s Ribosomal Rrna
Chain: 9

Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299

Molecule: Ribosomal Protein L2
Chain: A

Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299

Molecule: Ribosomal Protein L3
Chain: B

Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299

Molecule: Ribosomal Protein L4
Chain: C

Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299

Molecule: Ribosomal Protein L5
Chain: D

Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299

Molecule: Ribosomal Protein L6
Chain: E

Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299

Molecule: Ribosomal Protein L9
Chain: F

Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299

Molecule: Ribosomal Protein L11
Chain: G

Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299

Molecule: Ribosomal Protein L13
Chain: H

Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299

Molecule: Ribosomal Protein L14
Chain: I

Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299

Molecule: Ribosomal Protein L15
Chain: J

Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299

Molecule: Ribosomal Protein L16
Chain: K

Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299

Molecule: Ribosomal Protein L17
Chain: L

Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299

Molecule: Ribosomal Protein L18
Chain: M

Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299

Molecule: Ribosomal Protein L19
Chain: N

Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299

Molecule: Ribosomal Protein L20
Chain: O

Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299

Molecule: Ribosomal Protein L21
Chain: P

Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299

Molecule: Ribosomal Protein L22
Chain: Q

Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299

Molecule: Ribosomal Protein L23
Chain: R

Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299

Molecule: Ribosomal Protein L24
Chain: S

Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299

Molecule: General Stress Protein Ctc
Chain: T

Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299

Molecule: Ribosomal Protein L27
Chain: U

Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299

Molecule: Ribosomal Protein L29
Chain: W

Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299

Molecule: Ribosomal Protein L30
Chain: X

Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299

Molecule: Ribosomal Protein L31
Chain: Y

Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299

Molecule: Ribosomal Protein L32
Chain: Z

Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299

Molecule: Ribosomal Protein L33
Chain: 1

Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299

Molecule: Ribosomal Protein L34
Chain: 2

Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299

Molecule: Ribosomal Protein L35
Chain: 3

Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299

Molecule: Ribosomal Protein L36
Chain: 4

Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299
symmetry Space Group: I 2 2 2
R_factor 0.279 R_Free 0.304
crystal
cell
length a length b length c angle alpha angle beta angle gamma
170.800 409.500 695.700 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.30 Å
ligand ZIT enzyme
Gene
Ontology
ChainFunctionProcessComponent
1


2


3


4


A


B


C


D


E


F


G


H


I


J


K


L


M


N


O


P


Q


R


S


T


U


W


X


Y


Z


Primary referenceStructural basis for the antibiotic activity of ketolides and azalides., Schlunzen F, Harms JM, Franceschi F, Hansen HA, Bartels H, Zarivach R, Yonath A, Structure (Camb) 2003 Mar;11(3):329-38. PMID:12623020
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1147 Kb) [Save to disk]
  • Biological Unit Coordinates (1nwy.pdb1.gz) 1138 Kb
  • LPC: Ligand-Protein Contacts for 1NWY
  • CSU: Contacts of Structural Units for 1NWY
  • Likely Quarternary Molecular Structure file(s) for 1NWY
  • Retrieve 1NWY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NWY from S2C, [Save to disk]
  • View 1NWY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1NWY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1NWY, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1nwy0_, region 0 [Jmol] [rasmolscript] [script source]
        - Domain d1nwy1_, region 1 [Jmol] [rasmolscript] [script source]
        - Domain d1nwy2_, region 2 [Jmol] [rasmolscript] [script source]
        - Domain d1nwy3_, region 3 [Jmol] [rasmolscript] [script source]
        - Domain d1nwy4_, region 4 [Jmol] [rasmolscript] [script source]
        - Domain d1nwy9_, region 9 [Jmol] [rasmolscript] [script source]
        - Domain d1nwya_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1nwyb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1nwyc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1nwyd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1nwye_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1nwyf_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1nwyg_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1nwyh_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1nwyi_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1nwyj_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1nwyk_, region K [Jmol] [rasmolscript] [script source]
        - Domain d1nwyl_, region L [Jmol] [rasmolscript] [script source]
        - Domain d1nwym_, region M [Jmol] [rasmolscript] [script source]
        - Domain d1nwyn_, region N [Jmol] [rasmolscript] [script source]
        - Domain d1nwyo_, region O [Jmol] [rasmolscript] [script source]
        - Domain d1nwyp_, region P [Jmol] [rasmolscript] [script source]
        - Domain d1nwyq_, region Q [Jmol] [rasmolscript] [script source]
        - Domain d1nwyr_, region R [Jmol] [rasmolscript] [script source]
        - Domain d1nwys_, region S [Jmol] [rasmolscript] [script source]
        - Domain d1nwyt_, region T [Jmol] [rasmolscript] [script source]
        - Domain d1nwyu_, region U [Jmol] [rasmolscript] [script source]
        - Domain d1nwyw_, region W [Jmol] [rasmolscript] [script source]
        - Domain d1nwyx_, region X [Jmol] [rasmolscript] [script source]
        - Domain d1nwyy_, region Y [Jmol] [rasmolscript] [script source]
        - Domain d1nwyz_, region Z [Jmol] [rasmolscript] [script source]
  • Fold representative 1nwy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1nwy_T] [1nwy_E] [1nwy_S] [1nwy_L] [1nwy_4] [1nwy_F] [1nwy_D] [1nwy_1] [1nwy_0] [1nwy_A] [1nwy_R] [1nwy_M] [1nwy_2] [1nwy_J] [1nwy_Y] [1nwy_H] [1nwy_3] [1nwy_K] [1nwy_C] [1nwy_G] [1nwy_W] [1nwy_O] [1nwy_X] [1nwy_9] [1nwy_I] [1nwy_P] [1nwy_U] [1nwy_Q] [1nwy_Z] [1nwy_B] [1nwy] [1nwy_N]
  • SWISS-PROT database: [Q9RSS7] [Q9RXY1] [Q9RXJ2] [Q9RSK9] [Q9RXJ5] [Q9RSJ5] [Q9RSL2] [Q9RWB4] [Q9RSW7] [Q9RY64] [Q9RXJ7] [Q9RXK0] [Q9RXJ1] [Q9RX88] [Q9RY65] [Q9RXJ4] [Q9RXJ9] [Q9RSL0] [Q9RW44] [P49228] [Q9RSS4] [Q9RSH2] [Q9RSW6] [Q9RSK0] [Q9RXK2] [Q9RXK1] [Q9RXJ0] [Q9RSL3] [Q9RY49]
  • Domain organization of [RL11_DEIRA] [RL13_DEIRA] [RL14_DEIRA] [RL15_DEIRA] [RL16_DEIRA] [RL17_DEIRA] [RL18_DEIRA] [RL19_DEIRA] [RL20_DEIRA] [RL21_DEIRA] [RL22_DEIRA] [RL23_DEIRA] [RL24_DEIRA] [RL25_DEIRA] [RL27_DEIRA] [RL29_DEIRA] [RL2_DEIRA] [RL30_DEIRA] [RL31_DEIRA] [RL32_DEIRA] [RL33_DEIRA] [RL34_DEIRA] [RL35_DEIRA] [RL36_DEIRA] [RL3_DEIRA] [RL4_DEIRA] [RL5_DEIRA] [RL6_DEIRA] [RL9_DEIRA] by SWISSPFAM
  • Domains found in 1NWY: [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C ] by SMART
  • Other resources with information on 1NWY
  • Community annotation for 1NWY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science