1NYB Transcription Rna date Feb 12, 2003
title Solution Structure Of The Bacteriophage Phi21 N Peptide-Boxb Complex
authors C.D.Cilley, J.R.Williamson
compound source
Molecule: Boxb Rna
Chain: B
Engineered: Yes
Synthetic: Yes
Other_details: Synthesis Of The Rna Fragment From The Bacte Phi21 Boxb;

Molecule: Probable Regulatory Protein N
Chain: A
Engineered: Yes

Organism_scientific: Enterobacteria Phage Phi21
Organism_taxid: 10737
Gene: N
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
Primary referenceStructural mimicry in the phage phi21 N peptide-boxB RNA complex., Cilley CD, Williamson JR, RNA 2003 Jun;9(6):663-76. PMID:12756325
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (295 Kb) [Save to disk]
  • Biological Unit Coordinates (1nyb.pdb1.gz) 19 Kb
  • CSU: Contacts of Structural Units for 1NYB
  • Original NMR restraints for 1NYB from PDB
  • Retrieve 1NYB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NYB from S2C, [Save to disk]
  • View 1NYB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1NYB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1NYB, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1nyba_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1nyb_A] [1nyb_B] [1nyb]
  • SWISS-PROT database: [P07243]
  • Domain organization of [REGN_BPPH3] by SWISSPFAM
  • Other resources with information on 1NYB
  • Community annotation for 1NYB at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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