1NZP	Dna Binding Protein Transferase	date	Feb 19, 2003
title	Solution Structure Of The Lyase Domain Of Human Dna Polymera
authors	E.F.Derose, T.W.Kirby, G.A.Mueller, K.Bebenek, M.Garcia-Diaz, L.B T.A.Kunkel, R.E.London
compound		source
Molecule: Dna Polymerase Lambda Chain: A Fragment: Polymerase Lambda Lyase Domain(Residues 242 - 327 Synonym: Pol Lambda, Dna Polymerase Lambda, Dna Polymerase Pol Beta2; Ec: 2.7.7.7 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Poll Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Blr (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet30a(+)
method	Solution NMR
ligand		enzyme	Transferase E.C.2.7.7.7 BRENDA
related structures	by homologous chain: 1XSL
Primary reference	Solution structure of the lyase domain of human DNA polymerase lambda., DeRose EF, Kirby TW, Mueller GA, Bebenek K, Garcia-Diaz M, Blanco L, Kunkel TA, London RE, Biochemistry 2003 Aug 19;42(32):9564-74. PMID:12911298

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (192 Kb) [Save to disk] Biological Unit Coordinates (1nzp.pdb1.gz) 26 Kb CSU: Contacts of Structural Units for 1NZP Original NMR restraints for 1NZP from PDB Experimental data, such as chemical shifts, at BioMagResBank (BMRB) NMR Restraints Grid from BioMagResBank (BMRB) Retrieve 1NZP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1NZP from S2C, [Save to disk]

View 1NZP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1NZP

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1NZP, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1nzpa_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1nzp] [1nzp_A] SWISS-PROT database: [Q9UGP5] Domain organization of [DPOLL_HUMAN] by SWISSPFAM Domain found in 1NZP: [HhH1 ] by SMART

Other resources with information on 1NZP

Community annotation for 1NZP at PDBWiki (http://pdbwiki.org) NMR Ensemble (OLDERADO: core, domain and representative structure database) MMDB (Entrez's Structure Database)

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