1O0V Immune System date Sep 06, 2002
title The Crystal Structure Of Ige Fc Reveals An Asymmetrically Be Conformation
authors T.Wan, R.L.Beavil, S.M.Fabiane, A.J.Beavil, M.K.Sohi, M.Keown, R.J A.J.Henry, R.J.Owens, H.J.Gould, B.J.Sutton
compound source
Molecule: Immunoglobulin Heavy Chain Epsilon-1
Chain: A, B
Fragment: Fc Portion, Residues 251-573
Synonym: Ige Fc
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ige(Nd)
Expression_system: Mus Musculus
Expression_system_common: House Mouse
Expression_system_taxid: 10090
Expression_system_cell_line: Mouse Myeloma Ns0
Expression_system_vector_type: Eukaryotic
Expression_system_vector: Pee6
symmetry Space Group: P 21 21 2
R_factor 0.218 R_Free 0.297
length a length b length c angle alpha angle beta angle gamma
129.310 74.830 78.650 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand BMA, GOL, MAN, NAG, SO4 enzyme
note 1O0V supersedes 1LS0
related structures by homologous chain: 1FP5, 1G84
Primary referenceThe crystal structure of IgE Fc reveals an asymmetrically bent conformation., Wan T, Beavil RL, Fabiane SM, Beavil AJ, Sohi MK, Keown M, Young RJ, Henry AJ, Owens RJ, Gould HJ, Sutton BJ, Nat Immunol 2002 Jul;3(7):681-6. PMID:12068291
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (115 Kb) [Save to disk]
  • Biological Unit Coordinates (1o0v.pdb1.gz) 109 Kb
  • LPC: Ligand-Protein Contacts for 1O0V
  • CSU: Contacts of Structural Units for 1O0V
  • Likely Quarternary Molecular Structure file(s) for 1O0V
  • Structure Factors (197 Kb)
  • Retrieve 1O0V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1O0V from S2C, [Save to disk]
  • Re-refined 1o0v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1O0V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1O0V
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1O0V, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1o0va1, region A:228-330 [Jmol] [rasmolscript] [script source]
        - Domain d1o0va2, region A:331-438 [Jmol] [rasmolscript] [script source]
        - Domain d1o0va3, region A:439-545 [Jmol] [rasmolscript] [script source]
        - Domain d1o0vb1, region B:228-330 [Jmol] [rasmolscript] [script source]
        - Domain d1o0vb2, region B:331-438 [Jmol] [rasmolscript] [script source]
        - Domain d1o0vb3, region B:439-546 [Jmol] [rasmolscript] [script source]
  • Fold representative 1o0v from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1o0v_A] [1o0v] [1o0v_B]
  • SWISS-PROT database: [P01854]
  • Domain organization of [IGHE_HUMAN] by SWISSPFAM
  • Domain found in 1O0V: [IGc1 ] by SMART
  • Other resources with information on 1O0V
  • Community annotation for 1O0V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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