1O3O Hydrolase date Mar 06, 2003
title Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating B Active Site-Directed Serine Protease Inhibitors
authors B.A.Katz, K.Elrod, E.Verner, R.L.Mackman, C.Luong, W.D.Shrader, M. J.R.Spencer, P.A.Sprengeler, A.Kolesnikov, V.W.Tai, H.C.Hui, J.G.Breitenbucher, D.Allen, J.W.Janc
compound source
Molecule: Beta-Trypsin
Chain: A
Ec: 3.4.21.4
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Pancreas
symmetry Space Group: P 21 21 21
R_factor 0.190 R_Free 0.209
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.280 61.800 69.900 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.55 Å
ligand 785, CA enzyme Hydrolase E.C.3.4.21.4 BRENDA
related structures by homologous chain: 1O3F, 2PTN
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceElaborate manifold of short hydrogen bond arrays mediating binding of active site-directed serine protease inhibitors., Katz BA, Elrod K, Verner E, Mackman RL, Luong C, Shrader WD, Sendzik M, Spencer JR, Sprengeler PA, Kolesnikov A, Tai VW, Hui HC, Breitenbucher JG, Allen D, Janc JW, J Mol Biol 2003 May 23;329(1):93-120. PMID:12742021
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (1o3o.pdb1.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 1O3O
  • CSU: Contacts of Structural Units for 1O3O
  • Likely Quarternary Molecular Structure file(s) for 1O3O
  • Structure Factors (190 Kb)
  • Retrieve 1O3O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1O3O from S2C, [Save to disk]
  • Re-refined 1o3o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1O3O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1O3O
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1O3O, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1o3oa_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1o3o from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1o3o_A] [1o3o]
  • SWISS-PROT database: [P00760]
  • Domain organization of [TRY1_BOVIN] by SWISSPFAM
  • Domain found in 1O3O: [Tryp_SPc ] by SMART
  • Other resources with information on 1O3O
  • Community annotation for 1O3O at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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