1O6L Transferase date Oct 08, 2002
title Crystal Structure Of An Activated Aktprotein Kinase B (Pkb-Pif Chimera) Ternary Complex With Amp-Pnp And Gsk3 Peptide
authors J.Yang, P.Cron, V.M.Good, V.Thompson, B.A.Hemmings, D.Barford
compound source
Molecule: Rac-Beta Serinethreonine Protein Kinase
Chain: A
Fragment: Kinase Domain, Residues 146 - 467
Synonym: Protein Kinase Akt-2, Protein Kinase B Beta Rac-Pk-Beta, Pkb Beta;
Ec: 2.7.1.-
Engineered: Yes
Mutation: Yes
Other_details: Pkbbeta Residues 146-467 Fused To Eeqemfedfdyiadw;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus

Molecule: Glycogen Synthase Kinase-3 Beta
Chain: C
Fragment: Peptide, Residues 3-12
Synonym: Gsk-3 Beta
Ec: 2.7.1.37
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 21 21 21
R_factor 0.198 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.936 60.997 131.315 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.6 Å
ligand ANP, MN, TPO enzyme Transferase E.C.2.7.1 BRENDA
related structures by homologous chain: 1O6K
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of an activated Akt/protein kinase B ternary complex with GSK3-peptide and AMP-PNP., Yang J, Cron P, Good VM, Thompson V, Hemmings BA, Barford D, Nat Struct Biol 2002 Dec;9(12):940-4. PMID:12434148
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk]
  • Biological Unit Coordinates (1o6l.pdb1.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 1O6L
  • CSU: Contacts of Structural Units for 1O6L
  • Likely Quarternary Molecular Structure file(s) for 1O6L
  • Structure Factors (308 Kb)
  • Retrieve 1O6L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1O6L from S2C, [Save to disk]
  • Re-refined 1o6l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1O6L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1O6L
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1O6L, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1o6la_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1o6l from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1o6l_A] [1o6l] [1o6l_C]
  • SWISS-PROT database: [P31751]
  • Domain organization of [AKT2_HUMAN] by SWISSPFAM
  • Domains found in 1O6L: [S_TK_X] [S_TKc ] by SMART
  • Other resources with information on 1O6L
  • Community annotation for 1O6L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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