1O6O Nuclear Transport date Oct 10, 2002
title Importin Beta Aa1-442 Bound To Five Fxfg Repeats From Yeast Second Crystal Form
authors R.Bayliss, M.Stewart
compound source
Molecule: Importin Beta-1 Subunit
Chain: A, B, C
Fragment: Residues 1-442
Synonym: Karyopherin Beta-1 Subunit, Nuclear Factor P97, Im Kpnb1, Ntf97;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)

Molecule: Nucleoporin Nsp1
Chain: D, E, F
Fragment: Residues 497-608
Synonym: Nuclear Pore Protein Nsp1, Nucleoskeletal-Like Pro P110, Nsp1, Yjl041w, J1207;
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Human S Yeast
Organism_taxid: 4932
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 21 21 21
R_factor 0.236 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.110 125.350 266.670 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
related structures by homologous chain: 1F59, 1O6P
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceGLFG and FxFG nucleoporins bind to overlapping sites on importin-beta., Bayliss R, Littlewood T, Strawn LA, Wente SR, Stewart M, J Biol Chem 2002 Dec 27;277(52):50597-606. Epub 2002 Oct 7. PMID:12372823
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (214 Kb) [Save to disk]
  • Biological Unit Coordinates (1o6o.pdb1.gz) 71 Kb
  • Biological Unit Coordinates (1o6o.pdb2.gz) 72 Kb
  • Biological Unit Coordinates (1o6o.pdb3.gz) 71 Kb
  • CSU: Contacts of Structural Units for 1O6O
  • Likely Quarternary Molecular Structure file(s) for 1O6O
  • Retrieve 1O6O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1O6O from S2C, [Save to disk]
  • View 1O6O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1O6O
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1O6O, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1o6oa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1o6ob_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1o6oc_, region C [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1o6o_E] [1o6o_C] [1o6o_F] [1o6o] [1o6o_D] [1o6o_A] [1o6o_B]
  • SWISS-PROT database: [Q14974] [P14907]
  • Belongs to the eukaryotic nuclear pore complex (e-npc) family according to TCDB.
  • Belongs to the eukaryotic nuclear pore complex (e-npc) family according to TCDB.
  • Domain organization of [IMB1_HUMAN] [NSP1_YEAST] by SWISSPFAM
  • Domain found in 1O6O: [IBN_N ] by SMART
  • Other resources with information on 1O6O
  • Community annotation for 1O6O at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science