1O9X Plasma Protein date Dec 20, 2002
title Human Serum Albumin Complexed With Tetradecanoic Acid (Myristic Acid) And Hemin
authors P.A.Zunszain, J.Ghuman, T.Komatsu, E.Tsuchida, S.Curry
compound source
Molecule: Serum Albumin
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
symmetry Space Group: P 21 21 2
R_factor 0.231 R_Free 0.288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.084 202.702 39.366 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.2 Å
ligand HEM, MYR enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structural analysis of human serum albumin complexed with hemin and fatty acid., Zunszain PA, Ghuman J, Komatsu T, Tsuchida E, Curry S, BMC Struct Biol. 2003 Jul 7;3:6. Epub 2003 Jul 7. PMID:12846933
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk]
  • Biological Unit Coordinates (1o9x.pdb1.gz) 85 Kb
  • LPC: Ligand-Protein Contacts for 1O9X
  • CSU: Contacts of Structural Units for 1O9X
  • Likely Quarternary Molecular Structure file(s) for 1O9X
  • Structure Factors (81 Kb)
  • Retrieve 1O9X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1O9X from S2C, [Save to disk]
  • Re-refined 1o9x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1O9X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1O9X
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1O9X, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1o9xa2, region A:197-388 [Jmol] [rasmolscript] [script source]
        - Domain d1o9xa3, region A:389-582 [Jmol] [rasmolscript] [script source]
        - Domain d1o9xa1, region A:4-196 [Jmol] [rasmolscript] [script source]
  • Fold representative 1o9x from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1o9x] [1o9x_A]
  • SWISS-PROT database: [P02768]
  • Domain organization of [ALBU_HUMAN] by SWISSPFAM
  • Domain found in 1O9X: [ALBUMIN ] by SMART
  • Alignments of the sequence of 1O9X with the sequences similar proteins can be viewed for 1O9X's classification [ALBU_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [ALBU_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1O9X
  • Community annotation for 1O9X at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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