1ODP Lipid Transport date Mar 02, 1996
title Peptide Of Human Apoa-I Residues 166-185. Nmr, 5 Structures At Ph 6.6, 37 Degrees Celsius And Peptide:Sds Mole Ratio Of 1:40
authors G.Wang, W.D.Treleaven, R.J.Cushley
compound source
Molecule: Apoa-I Peptide
Chain: A
Fragment: Residues 166 - 185
Synonym: Apoa-I (166 - 185), Apolipoprotein A-I (166 - 185);
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolution NMR
Primary referenceConformation of human serum apolipoprotein A-I(166-185) in the presence of sodium dodecyl sulfate or dodecylphosphocholine by 1H-NMR and CD. Evidence for specific peptide-SDS interactions., Wang G, Treleaven WD, Cushley RJ, Biochim Biophys Acta 1996 Jun 11;1301(3):174-84. PMID:8664326
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1ODP
  • Original NMR restraints for 1ODP from PDB
  • Retrieve 1ODP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ODP from S2C, [Save to disk]
  • View 1ODP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ODP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1ODP, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1odp__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1odp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1odp] [1odp_A]
  • SWISS-PROT database: [P02647]
  • Domain organization of [APOA1_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 1ODP with the sequences similar proteins can be viewed for 1ODP's classification [APOA1_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [APOA1_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1ODP
  • Community annotation for 1ODP at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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