1OEF Apolipoprotein date Mar 16, 1996
title Peptide Of Human Apoe Residues 263-286, Nmr, 5 Structures At Ph 4.8, 37 Degrees Celsius And Peptide:Sds Mole Ratio Of 1:90
authors G.Wang, G.K.Pierens, W.D.Treleaven, J.T.Sparrow, R.J.Cushley
compound source
Molecule: Apolipoprotein E
Chain: A
Fragment: Residues 263 - 286
Synonym: Apoe(263-286), Apolipoprotein E(263-286)
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolution NMR
subcellular loc. Membrane localization by OPM: Undefined
Primary referenceConformations of human apolipoprotein E(263-286) and E(267-289) in aqueous solutions of sodium dodecyl sulfate by CD and 1H NMR., Wang G, Pierens GK, Treleaven WD, Sparrow JT, Cushley RJ, Biochemistry 1996 Aug 13;35(32):10358-66. PMID:8756691
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1OEF
  • Original NMR restraints for 1OEF from PDB
  • Retrieve 1OEF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OEF from S2C, [Save to disk]
  • View 1OEF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OEF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1OEF, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1oef__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1oef from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1oef] [1oef_A]
  • SWISS-PROT database: [P02649]
  • Domain organization of [APOE_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 1OEF with the sequences similar proteins can be viewed for 1OEF's classification [APOE_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [APOE_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1OEF
  • Community annotation for 1OEF at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science