1OEY	Immune System	date	Apr 02, 2003
title	Heterodimer Of P40phox And P67phox Pb1 Domains From Human Nadph Oxidase
authors	M.I.Wilson, D.J.Gill, O.Perisic, M.T.Quinn, R.L.Williams
compound		source
Molecule: Neutrophil Cytosol Factor 2 Chain: A, B, C, D Fragment: Pb1 Domain, Residues 352-429 Synonym: P67-Phox Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: C41(De3) Expression_system_plasmid: Poptg
Molecule: Neutrophil Cytosol Factor 4 Chain: J, K, L, M Fragment: Pb1 Domain, Residues 237-339 Synonym: P40-Phox Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: C41(De3) Expression_system_plasmid: Poptg
symmetry	Space Group: P 64	R_factor 0.210 R_Free 0.252
crystal cell	length a length b length c angle alpha angle beta angle gamma 151.422 151.422 68.317 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.0 Å
ligand	MSE	enzyme
Gene Ontology	Chain Function Process Component J, M, K, L protein binding protein dimerization activit... antigen processing and prese... antigen processing and prese... immune response antigen processing and prese... interaction with host oxidation-reduction process phagosome maturation cytoplasm cytosol membrane phagolysosome NADPH oxidase complex
Primary reference	PB1 domain-mediated heterodimerization in NADPH oxidase and signaling complexes of atypical protein kinase C with Par6 and p62., Wilson MI, Gill DJ, Perisic O, Quinn MT, Williams RL, Mol Cell 2003 Jul;12(1):39-50. PMID:12887891

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (137 Kb) [Save to disk] Biological Unit Coordinates (1oey.pdb1.gz) 36 Kb Biological Unit Coordinates (1oey.pdb2.gz) 34 Kb Biological Unit Coordinates (1oey.pdb3.gz) 33 Kb Biological Unit Coordinates (1oey.pdb4.gz) 34 Kb LPC: Ligand-Protein Contacts for 1OEY CSU: Contacts of Structural Units for 1OEY Likely Quarternary Molecular Structure file(s) for 1OEY Structure Factors (1375 Kb) Retrieve 1OEY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1OEY from S2C, [Save to disk] Re-refined 1oey structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1OEY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 1OEY

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 1OEY, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1oeya_, region A [Jmol] [rasmolscript] [script source]     - Domain d1oeyb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1oeyc_, region C [Jmol] [rasmolscript] [script source]     - Domain d1oeyd_, region D [Jmol] [rasmolscript] [script source]     - Domain d1oeyj_, region J [Jmol] [rasmolscript] [script source]     - Domain d1oeyk_, region K [Jmol] [rasmolscript] [script source]     - Domain d1oeyl_, region L [Jmol] [rasmolscript] [script source]     - Domain d1oeym_, region M [Jmol] [rasmolscript] [script source] Fold representative 1oey from FSSP and Dali (Families of Structurally Similar Proteins) Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1oey_A] [1oey_B] [1oey_C] [1oey_D] [1oey_J] [1oey_K] [1oey_L] [1oey_M] SWISS-PROT database: [P19878] [Q15080] Domain organization of [NCF2_HUMAN] [NCF4_HUMAN] by SWISSPFAM Domain found in 1OEY: [PB1 ] by SMART Alignments of the sequence of 1OEY with the sequences similar proteins can be viewed for 1OEY's classification [NCF2_HUMAN] [NCF4_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [NCF2_HUMAN] [NCF4_HUMAN] at ProtoMap. Click on the Cluster number.

Other resources with information on 1OEY

Community annotation for 1OEY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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