1OEY Immune System date Apr 02, 2003
title Heterodimer Of P40phox And P67phox Pb1 Domains From Human Nadph Oxidase
authors M.I.Wilson, D.J.Gill, O.Perisic, M.T.Quinn, R.L.Williams
compound source
Molecule: Neutrophil Cytosol Factor 2
Chain: A, B, C, D
Fragment: Pb1 Domain, Residues 352-429
Synonym: P67-Phox
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: C41(De3)
Expression_system_plasmid: Poptg

Molecule: Neutrophil Cytosol Factor 4
Chain: J, K, L, M
Fragment: Pb1 Domain, Residues 237-339
Synonym: P40-Phox
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: C41(De3)
Expression_system_plasmid: Poptg
symmetry Space Group: P 64
R_factor 0.210 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
151.422 151.422 68.317 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.0 Å
ligand MSE enzyme
Primary referencePB1 domain-mediated heterodimerization in NADPH oxidase and signaling complexes of atypical protein kinase C with Par6 and p62., Wilson MI, Gill DJ, Perisic O, Quinn MT, Williams RL, Mol Cell 2003 Jul;12(1):39-50. PMID:12887891
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (137 Kb) [Save to disk]
  • Biological Unit Coordinates (1oey.pdb1.gz) 36 Kb
  • Biological Unit Coordinates (1oey.pdb2.gz) 34 Kb
  • Biological Unit Coordinates (1oey.pdb3.gz) 33 Kb
  • Biological Unit Coordinates (1oey.pdb4.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 1OEY
  • CSU: Contacts of Structural Units for 1OEY
  • Likely Quarternary Molecular Structure file(s) for 1OEY
  • Structure Factors (1375 Kb)
  • Retrieve 1OEY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OEY from S2C, [Save to disk]
  • Re-refined 1oey structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1OEY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OEY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1OEY, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1oeya_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1oeyb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1oeyc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1oeyd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1oeyj_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1oeyk_, region K [Jmol] [rasmolscript] [script source]
        - Domain d1oeyl_, region L [Jmol] [rasmolscript] [script source]
        - Domain d1oeym_, region M [Jmol] [rasmolscript] [script source]
  • Fold representative 1oey from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1oey_M] [1oey_K] [1oey] [1oey_L] [1oey_A] [1oey_D] [1oey_C] [1oey_J] [1oey_B]
  • SWISS-PROT database: [P19878] [Q15080]
  • Domain organization of [NCF2_HUMAN] [NCF4_HUMAN] by SWISSPFAM
  • Domain found in 1OEY: [PB1 ] by SMART
  • Other resources with information on 1OEY
  • Community annotation for 1OEY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science