1OFF Electron Transport date Apr 14, 2003
title 2fe-2s Ferredoxin From Synechocystis Sp. Pcc 6803
authors R.H.H.Van Den Heuvel, A.Mattevi
compound source
Molecule: Ferredoxin I
Chain: A
Synonym: Ferredoxin
Engineered: Yes
 Organism_scientific: Synechocystis Sp.
Organism_taxid: 1148
Strain: Pcc6803
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 65
R_factor 0.174 R_Free 0.216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.788 38.788 111.751 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand FES enzyme
related structures by homologous chain: 1J7C, 1QOB
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe active conformation of glutamate synthase and its binding to ferredoxin., van den Heuvel RH, Svergun DI, Petoukhov MV, Coda A, Curti B, Ravasio S, Vanoni MA, Mattevi A, J Mol Biol 2003 Jun 27;330(1):113-28. PMID:12818206
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (21 Kb) [Save to disk]
  • Biological Unit Coordinates (1off.pdb1.gz) 17 Kb
  • LPC: Ligand-Protein Contacts for 1OFF
  • CSU: Contacts of Structural Units for 1OFF
  • Likely Quarternary Molecular Structure file(s) for 1OFF
  • Structure Factors (59 Kb)
  • Retrieve 1OFF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OFF from S2C, [Save to disk]
  • Re-refined 1off structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1OFF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1OFF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OFF, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1offa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1off] [1off_A]
  • SWISS-PROT database: [P27320]
  • Domain organization of [FER_SYNY3] by SWISSPFAM
    • Other resources with information on 1OFF
  • Community annotation for 1OFF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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