1OGS Hydrolase date May 13, 2003
title Human Acid-Beta-Glucosidase
authors H.Dvir, M.Harel, A.A.Mccarthy, L.Toker, I.Silman, A.H.Futerman, J.L.Sussman
compound source
Molecule: Glucosylceramidase
Chain: A, B
Synonym: Glucocerebrosidase, Beta-Glucocerebrosidase, Acid Beta-Glucosidase, D-Glucosyl-N-Acylsphingosine Glucohydrolase, Alglucerase, Imiglucerase;
Ec: 3.2.1.45
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Cricetulus Griseus
Expression_system_taxid: 10029
Expression_system_cell_line: Cho
symmetry Space Group: C 2 2 21
R_factor 0.195 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
107.735 285.232 91.678 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.0 Å
ligand NAG, NDG, SO4 enzyme Hydrolase E.C.3.2.1.45 BRENDA
related structures by homologous chain: 1Y7V
subcellular loc. Membrane localization by OPM: Lysosome membrane
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • negative regulation of inter...

  • Primary referenceX-ray structure of human acid-beta-glucosidase, the defective enzyme in Gaucher disease., Dvir H, Harel M, McCarthy AA, Toker L, Silman I, Futerman AH, Sussman JL, EMBO Rep 2003 Jul;4(7):704-9. PMID:12792654
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (188 Kb) [Save to disk]
  • Biological Unit Coordinates (1ogs.pdb1.gz) 92 Kb
  • Biological Unit Coordinates (1ogs.pdb2.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 1OGS
  • CSU: Contacts of Structural Units for 1OGS
  • Likely Quarternary Molecular Structure file(s) for 1OGS
  • Structure Factors (700 Kb)
  • Retrieve 1OGS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OGS from S2C, [Save to disk]
  • Re-refined 1ogs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1OGS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OGS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1OGS, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ogsa1, region A:1-77,A:432-497 [Jmol] [rasmolscript] [script source]
        - Domain d1ogsa2, region A:78-431 [Jmol] [rasmolscript] [script source]
        - Domain d1ogsb1, region B:1-77,B:432-497 [Jmol] [rasmolscript] [script source]
        - Domain d1ogsb2, region B:78-431 [Jmol] [rasmolscript] [script source]
  • Fold representative 1ogs from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ogs] [1ogs_A] [1ogs_B]
  • SWISS-PROT database: [P04062]
  • Domain organization of [GLCM_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 1OGS with the sequences similar proteins can be viewed for 1OGS's classification [GLCM_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [GLCM_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1OGS
  • Community annotation for 1OGS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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